LOC113544125 (LOC100304632)


Basic Information

Item Value
gene id LOC113544125
gene name LOC100304632
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 21359519 ~ 21361744 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU323409
acacacaggacacacagataGTCAGGATGGTGAGAAACAGTGTGACTGTGCAGGCAGCTGCTCTCCTGCTGCTCACTTTGCTCTTCATCTGCTGGAATGCTGCAGAAGCCACTGATGGAGCATCAGACTGCTGTTTGACGACTGTGgacaaaaaaatcccacaaaacCTGGTGAAGTCCTACTACGTTCAGACTCTAGAGATGGGCTGCAGAGTGCAGGCCACAGTTTGTCACGAAGAAAGGCAAGCAACTGTGTGCACCTCCTGCAACAAAGAACAACTGGGTTAAAAAGTTGAtcaataaactgaaaaaaaaatccagaaatccATCCAAACGAAAAACACAGTAGATTATCTCGGATCAGATAATCCTGGATCAGATAACACAGGTCCCGTTTCAATCAATCAAGGACTCAACTCGGATTAGACTGATCTGAGAAGCTGAAACCACTACCAGGAATGAATaagcttttataaatatattgctATTGATGTGTGAAACCAAATCCACCACCTGAACATGTTGTGATTGTATTTTGTAATATCTCTAGGTAGACGTAGGTTTATTATCTttagtctgaaatatttatacCTGCTATATACTATATGTATTTTCTTGTGAATCGGAAAGCAGGTTCTGTTTTTTGTGGTGTATAACAGATGCCATTGATTTGTATTG
>XM_026942774.2
AGAGCTCGTGCTCGGTGTAGTctggagcacacacacaggacacacagataGTCAGGATGGTGAGAAACAGTGTGACTGTGCAGGCAGCTGCTCTCCTGCTGCTCACTTTGCTCTTCATCTGCTGGAATGCTGCAGAAGCCACTGATGGAGCATCAGACTGCTGTTTGACGACTGTGgacaaaaaaatcccacaaaacCTGGTGAAGTCCTACTACGTTCAGACTCTAGAGATGGGCTGCAGAGTGCAGGCCACAGTGTTTGTCACGAAGAAAGGCAAGCAACTGTGTGCACCTCCTGCAACAAAGAACAACTGGGTTAAAAAGTTGAtcaataaactgaaaaaaaaatccagaaatccATCCAAACGAAAAACACAGTAGATTATCTCGGATCAGATAATCCTGGATCAGATAACACAGGTCCCGTTTCAATCAATCAAGGACTCAACTCGGATTAGACTGATCTGAGAAGCTGAAACCACTACCAGGAATGAATaagcttttataaatatattgctATTGATGTGTGAAACCAAATCCACCACCTGAACATGTTGTGATTGTATTTTGTAATATCTCTAGGTAGACGTAGGTTTATTATCTttagtctgaaatatttatacCTGCTATATACTATATGTATTTTCTTGTGAATCGGAAAGCAGGTTCTGTTTTTTGTGGTGTATAACAGATGCCATTGATTTGTATTGTGAATGTTTATAAAAGAcaatttttctaaaaaaaaaaaaaaagtgtgaatcCTATTTGTATTTCCTGTTTGCATAGCATTAAAAAGCCATCATATTGTTtca

Function

GO: NA

KEGG:

id description
K05512 CCL19, ELC; C-C motif chemokine 19

RNA

RNA id representative length rna type GC content exon number start site end site
TU323409 False 677 lncRNA 0.41 4 21359549 21361642
XM_026942774.2 True 811 mRNA 0.39 4 21359519 21361744

Neighbor

gene id symbol gene type direction distance location
pigo pigo coding upstream 9696 21337235 ~ 21349823 (+)
stoml2 stoml2,LOC107686459,LOC107688641,LOC107569390 coding upstream 23581 21327106 ~ 21335938 (+)
fam166b fam166b coding upstream 164483 21188099 ~ 21195036 (+)
rnf208 rnf208,si:dkey-106l3.6,LOC107688056,LOC107744121,LOC107713373,LOC107686464 coding upstream 191977 21151369 ~ 21167542 (+)
slc5a1 slc5a1,LOC107713298,LOC107744177,LOC107688629 coding upstream 212286 21129286 ~ 21147233 (+)
phf24 phf24 coding downstream 32077 21393821 ~ 21424847 (+)
prkab1a prkab1 coding downstream 74158 21435902 ~ 21445264 (+)
LOC113544185 pla2g1b coding downstream 85491 21447235 ~ 21452073 (+)
LOC113523962 pla2g1b coding downstream 100799 21462543 ~ 21466143 (+)
LOC113543961 NA coding downstream 106668 21468412 ~ 21473118 (+)
G272803 NA non-coding upstream 368968 20990343 ~ 20990551 (+)
G272770 NA non-coding upstream 427936 20927622 ~ 20931583 (+)
G272470 NA non-coding upstream 609872 20749361 ~ 20749647 (+)
G272450 NA non-coding upstream 622019 20716511 ~ 20737500 (+)
G272448 NA non-coding upstream 634325 20659603 ~ 20725194 (+)
G272940 NA non-coding downstream 118156 21479900 ~ 21492672 (+)
LOC113544190 NA non-coding downstream 126368 21488112 ~ 21492076 (+)
G273248 NA non-coding downstream 600920 21962664 ~ 21962867 (+)
G273258 NA non-coding downstream 620235 21981979 ~ 21982191 (+)
G273226 NA non-coding downstream 676095 22037839 ~ 22038149 (+)
G272408 NA other upstream 816565 20540325 ~ 20542954 (+)
G272374 NA other upstream 930376 20423399 ~ 20429143 (+)
G272367 LOC108276637 other upstream 960572 20398280 ~ 20398947 (+)
gfra2b gfra2 other upstream 1416014 19853554 ~ 19943505 (+)
trnae-cuc_36 NA other upstream 1510693 19848755 ~ 19848826 (+)
LOC113543995 NA other downstream 114343 21476087 ~ 21478880 (+)
LOC113544129 LOC108276555,LOC108427250,LOC107687808,LOC107720650,LOC107744134,LOC107678044,LOC563710,LOC107560524 other downstream 560807 21922551 ~ 22033997 (+)
tmem230a tmem230,tmem230a,LOC103035677,LOC105888828,LOC106565272 other downstream 1007512 22369256 ~ 22374875 (+)
lrrtm4l1 lrrtm4l1,LOC108276585,LOC108433509,LOC107730422,LOC107553720 other downstream 1260684 22622428 ~ 22665570 (+)
lhx6 lhx6,LOC107597616,LOC107685129 other downstream 1688068 23049812 ~ 23145567 (+)

Expression


Co-expression Network