LOC113544129 (LOC108276555,LOC108427250,LOC107687808,LOC107720650,LOC107744134,LOC107678044,LOC563710,LOC107560524)


Basic Information

Item Value
gene id LOC113544129
gene name LOC108276555,LOC108427250,LOC107687808,LOC107720650,LOC107744134,LOC107678044,LOC563710,LOC107560524
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 21922551 ~ 22033997 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU323780
TAAAAGAGCCAACCAAGGACTCGCAACTCAGACGTTCAATACACGCTCCATGCCAGTGAGCTCTATGTACAGGGAGATGggatttcatttgtgtttttctgttgtccttttttattcttcttttcaaCACAAACGCTGCTCTTCTGAGTCCCGTTCAATGGAAAATTGAAACTCAATACAGCATGCATGGTGCGTTAAATGGCACTTTAGTTGCTGTTCTGTGTCCTTTTCGTGCCAAACACGACGGGACGTTGCCTTTGAAAAGCTGATAATGGTGATTCACTCACACTGTGTtgagaatgaaaaagaatgtgCAATAAACAAGTTTCGTAGTGGGAGAAAAAGGGGGAACAGGTGCGTAGACAAAATAGGGCCAACATGTaagagaatgaatgaaacaaattaaTGTTTACCAGCGCTCGAAGACATCTAGCTGTTATTTTCAGTTATATTTCCAGACAGTGGTTATACACGGTGTCAGGGATTGATCTTTGAAAAAGATCGGGAAGTCCCGTTTGGACAGAATCCTTTCAGAGAAGAAGAGGCTCTGCAGTCGGTGTTGATACTGTCATTAAGTTTCCAGTGCAGGTTTCAGTGCAGACCTCCTGAGACGTGCACGTGTACCAAAGATCAAGTGTTCGTTTTGATGTACAGTACACACAGCATCAGTGCCCCTTGTGGTACCAAACCACCAAATCTGTAAACTCGGACACAAATTAAAGGCCAGAAATCGGCACAGCCGTAACAGATTCACCCTCAGTTGTAGCTCAGATGTCAACCTTTGAAGTCAAAACATtaacacagagagaaatggCTTGTTTCAGTGCGCTGCATCTAGCTagtcagctgtgtgtatgtgtgtttctcccAACTCTGTTAGCAGGTAGGAGTTATCTTCTATTAAAACTGCCCTAATTGTCTGCTGAC
>XM_026942779.2
tgtgcctTCGCGCGGACCTTGACGGAGACTCGGTATATTTAATGTGACGTTTTGTCGGAGCCGTTCTACGACATGCTGCATGGTCACGACGGGGGAACCGACACACGCGGATACCGGATATCTTCGACGCGCTCGTGCTGCGGCGGAGCTCTGATTGCGTCGCGGAACCGGCGGTGGCTGCTGCGCGCGACGGCTCCGGTTTGCGGGCTCGGGAAGACGCGTGCCATGCGGATGATTCGGGACGCAAGACGCATATGAAAAACCCCTACCGACTGTCGACACCGATGAGCTCTGCCATGCGACGGCGATGGTTTGTGGTGCTGCTGGTGCAGGCATGGCTCTCTGCAAGTTTTTCTAATGGTGAGCGGCCATGCCCACGGAGCTGCCGCTGTGATGGCAAGATTGTTTATTGCGAGTCCAGTGCATTCCGCGACGTGCCAAAAAACCTGTCTGGTGGCTGTCAGGGCTTGTCTCTGCGCTACAACAGCTTGGCAAGCTTGCGTGCTGGCCAGTTTGTTGGCCTCAACCAGCTCATTTGGCTCTATCTTGACCACAACTACATTGCAACCGTGGACGCTCGTGCCTTTCAAGGAATAAGGAGGCTCAAAGAGCTAATCCTGAGCTCCAACAAAATCACGCTCTTGCATAATACCACATTCCACCTGGTACCAAATCTGAGGAACCTTGACCTGTCCTACAACAAACTGCAGGCTCTGCAGCCAGGTCAGTTCCAAGGACTGCGCAAACTCATCAGTTTGCACATGCGCTCCAACTCCTTGAAGAATCTACCATCTCGCCTCTTTCAGGATTGCCGCAATCTTGAATTCCTCGACCTTGGCTATAATCGTCTGCGCAGCATCACACGTAATGCAATGTCAGGTCTTGTGAAGCTGACGGAACTCCATCTCGAGCATAATCAGTTCTCCAAAATCAACTTTTCCAACTTCCCCCGGCTTTACAACCTCCGCGCTCTTTACCTGCAGTGGAATCGCATCCGGACCATGAGCGAGGGACTTACATGGACCTGGAGTTCTCTACAGAAGTTGGACCTTTCAGGGAATGACCTACAGGAGCTGGAGCCAGAGGTCTACAAATGCATGCCGAACTTGCAGACACTTAATGTGGATTCCAACAAGCTGGTTAACGTCTCTCAGGAAGTTGTTTCGGCTTGGATATCCCTGACCATGATCAGCCTAGCTGGAAACATGTGGGACTGTGGACCTGCAGTCTGCCCCCTGGTAGCTTGGCTGAAAAACTTTCAAGGGAACAAGGAGACCCCCATGATTTGTGCCTCACCCAAAGAGGCTCAAGGCGAGAAAGTCTTGGATGCTGTGGAGGCAAGTGGTGTGTGCAAGGTCAGTCATGTTACTCCCTCATTTGCTAGTTCTACAACTACCCTTTCTGGTGCCCCTGCTCTGAATGCAGCCCTTCCCTTTGCGCCCACACTTCATTCCGGAGGTAGCAGAAGGGGCCAGGGCACATCCTTGCAACATCCCACCCCTTCAAGACCACCACAATCTGATGTCTCTCAACCCGAGCAAGATTTTGAGCCAGTGTCCTTCCACAAGATAGTGGCAGGGAGCGTTGCACTATTTTTATCCGTTGCAATGATTCTCCTTGTGATTTATGTGTCATGGAAGCGCTATCCGAGCAGTGTCAAGCAGCTGCAGGAAAACACTTCAGCTGCCCGCAAACGTCGGAAAAAGTCTAGGGAGACTGAACGTACGCTCAGCACCCCCTTGCAGGAGTATTATGTGGACTACAAACCTTCAAGCTCCGAGGCCACGGATGTTCTGGTCAATGGAACAGGGCCATGCACATACTCCATATCCGGTTCCAGAGAATGTGAGGTTCCTCACCAGATGAGTGCTCTGACCTTCTATCGTTATGAACAGCCCGTTCTGGATTACTGCCAAGCCCATCAGCCGATGCGCCTCAACGTGAACTATGATTGCCCGCCTCAGGGCCTTGATGATCTGGCACCGCGTGACAGGGGCACCATTCAGACCGTGGCTCTGCCAGCTGTTCCACCCTCCAGCTCACCTCCTACCCTGAGAACACCTGTACAAGGCCCCGGTGTCCCTTACCCGGGCACAGAGCGCTCCGTAAAGTACCCGTCCATCGAGCGGCCCACTAGCACCCTCACCTTTGGACGCTAGCACTCTGGGATGCTAAAGTGAATTCTTTTGGATGCTAATGACTGTTTCAGGAGTTAGCGCCTTTGGAGAAGCTAACATTTTCAGAAGGAATTTCACTCCACGAACGGATCTAACTTTATGTGGCTGGATTCTTCTTCTTGTGACCTTTTGTTttctgaaaaaagagagaaggatcTATAAAAGAGCCAACCAAGGACTCGCAACTCAGACGTTCAATACACGCTCCATGCCAGTGAGCTCTATGTACAGGGAGATGggatttcatttgtgtttttctgttgtccttttttattcttcttttcaaCACAAACGCTGCTCTTCTGAGTCCCGTTCAATGGAAAATTGAAACTCAATACAGCATGCATGGTGCGTTAAATGGCACTTTAGTTGCTGTTCTGTGTCCTTTTCGTGCCAAACACGACGGGACGTTGCCTTTGAAAAGCTGATAATGGTGATTCACTCACACTGTGTtgagaatgaaaaagaatgtgCAATAAACAAGTTTCGTAGTGGGAGAAAAAGGGGGAACAGGTGCGTAGACAAAATAGGGCCAACATGTaagagaatgaatgaaacaaattaaTGTTTACCAGCGCTCGAAGACATCTAGCTGTTATTTTCAGTTATATTTCCAGACAGTGGTTATACACGGTGTCAGGGATTGATCTTTGAAAAAGATCGGGAAGTCCCGTTTGGACAGAATCCTTTCAGAGAAGAAGAGGCTCTGCAGTCGGTGTTGATACTGTCATTAAGTTTCCAGTGCAGGTTTCAGTGCAGACCTCCTGAGACGTGCACGTGTACCAAAGATCAAGTGTTCGTTTTGATGTACAGTACACACAGCATCAGTGCCCCTTGTGGTACCAAACCACCAAATCTGTAAACTCGGACACAAATTAAAGGCCAGAAATCGGCACAGCCGTAACAGATTCACCCTCAGTTGTAGCTCAGATGTCAACCTTTGAAGTCAAAACATtaacacagagagaaatggCTTGTTTCAGTGCGCTGCATCTAGCTagtcagctgtgtgtatgtgtgtttctcccAACTCTGTTAGCAGGTAGGAGTTATCTTCTATTAAAACTGCCCTAATTGTCTGCTGACCTTCAGTACAATAAGACAAAACTCTCTACAGAGgtgaaaaaagtcaaataagTTTAGGAAAAAGGCGGCAAATAAACTAgacttgtgtgatattgattgTTTTTTCCTGCTCACAATTTAccgttttaaaaaaatgataatggcAGGAGAACGAGAATTCCACTATTTAAAGTTTAAGGAGAGTACAGGAGGatgtaataatattaccagatgtgcagtcaggaactgcttgttGGCAGTGGCAATCGCTGTACTGTGAAAACTCAGCTGAACAgtggatttttaggtgattctgcagtaatgtacAGTTAAATagtacgaaaaaaaaaagacattttcattGGCTGTGtttgagagcaaaaaaaaaaaaacagcagcatatTGAATCACTTTGTAATTATCATTATCACTAACATTACAAGTGGATTTTGGACtgcttaatcttttttttttttttttaacattttaaagtgctttttttttttttttttttcatttttgggcaGTTTTTTTGGTGGCATACCTAAAGTGATGCCAAGCAAACTGATGTTAGTTAACTAATGTTagataaatcaaatatatacatggatagattttattaatgaacgcaAACAATTCTCCATTTACCGTTACAGAAAGGTGAAAATGAGGACATGTGAGATGGGggaaagtgggcggggcttacagGCAGGGTGAGTTACTATTAGAGAGTGCGAAACACCTCTttaactgtcagtcattccagattcatatatCGATTGGTAcatttgccatttttattggaaagaaaaagaagatgcgcttttggtgtatttttaagTGATAACTCGTGTAAAAATCACTGGACATCGGGGCAGTGTAGgaacaaataaatcattatatcgCACAAGTCTACTGAGCAATGTggattttcttttaacagagatTAAAAAGCATGTCAGTCGGTTCAGCAtccactgagaaaagaaaaaaaaatgcttggtTTCGGATTAGAACAAGGATTACACAGTGTGTGAGGATCCCATTAGGTCCCATTTGTTTATATGGAGGCCAAATAAATGGTTGCTTGCTGTGTGTTTAGCATTAATGGCAGAGATTGAGTAACATTCTGGACAATTTAAGATGTTTTAATAGATTTACATGTTCACTATTTCAATGCTTTGCTATCAGAGTGTCTCCTGAGTGCTGAGACATTGAATGTTTGCCACTAGAAGCCATGTCTCCATCTACAGGAAGTCAATTCCCCATTGGCGCAGTATGGACCACTGGtgatttgcattcatttttactTGTAAATGGACTCCAGATCTAAGGAACATTGGGATTGTTGCCTGTAAAcatggatatttttattttttgtcaccccgtgtgcctgtgtgtttggACTCAACACAATGAATGTGGATCTTGTACCTCACCATTGGtgtattttctggattttttttttaatcctactCTCCTGCACCACGCCAACTTCATTCTCGCATGTCGAGTTCAGAGGTCAGTTCAAAACCTGTCAGACTTTTATTTGACCTCGACGTGCAAACTGAATGGGAAGACGATGATTCAGCCTCGCTGTGAGAGACATGGCACCCTCGAGGCGATCAGTGACTCTGCACAATGTTTGCAGACGCTAATTAATTAACACACAGGACGTGTTTATCTTGTACATAGAGAGGAAAAAGTATCACATCGTTTGCTtcttgatacacacacacatgcacacacacacacacacacgcacacacagatggTGAACAGTAGGTGTTGCTCTGCAGAGACTGATCTCAGAACAGCCGTGAGAGAAATCTTCAGTAATATATCCACATTTTAAAGGTCGATATTTTTCTATCTGCTCTCGTGACCTTTACATCTCATTGTGCTCATTAGTTTTCATAATCCGTCCTTTTGCTCGCCGAACGCGTGGAGCTCGACAGTGTAAAGATTTTACAGAACACTCCGGAAAAATAAGGTCTTGTCATTTTAACAATGTTCCACATGGTGTCCATGCTCCCTGGTTTCATTCTGCTGTGGTATTTTCCTCCGACTCTCCCAGTCAACGTCGGTTCAATCTCCTCTGCTGTGTTTTGCAATTTTGAAAAGTCCTGGCAATACacaaaaaagagataaaaaaaaaaaaacaaaaagaaaaaatatctacATGTACAATAAGAGTAGCTTGTGTTGTGTTCCAAAGCTTCATGTATGAATAATGAGCTGTTGATTTGATATTATTGTTAATGCTGTGGAAGTTTTACCCACAATGCTCCAGTATCGCCcatcaggaagaaaaaagaaaaggaaaaaaaaagagaagcgcCCTGAACACACCCTGAGAATATTCTCGAGACGTCTCAGCAATCACACACAGGCTGTACACACCAACCCAGAGTTTGGTACATTCCTTTGTTCTGATTAGTACTGTCCACCTGGATGTGCATTATGGGAaagcaaagggaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU323780 False 927 lncRNA 0.43 1 22030600 22031526
XM_026942779.2 True 5734 mRNA 0.45 3 21922551 22033997

Neighbor

gene id symbol gene type direction distance location
LOC113543961 NA coding upstream 449433 21468412 ~ 21473118 (+)
LOC113523962 pla2g1b coding upstream 456408 21462543 ~ 21466143 (+)
LOC113544185 pla2g1b coding upstream 470478 21447235 ~ 21452073 (+)
prkab1a prkab1 coding upstream 477287 21435902 ~ 21445264 (+)
phf24 phf24 coding upstream 497704 21393821 ~ 21424847 (+)
ppp2r2ab ppp2r2a,ppp2r2ab,LOC108277296,LOC108427249,LOC107744137,LOC107720666,LOC107678035,LOC107687801 coding downstream 238069 22272066 ~ 22289033 (+)
bnip3lb bnip3lb,LOC108277095,LOC108427248,LOC103036208,LOC107687791,LOC107561399,LOC107678042 coding downstream 257084 22291081 ~ 22310553 (+)
dpysl2b dpysl2b,dpysl2,LOC108277094,LOC108427246,LOC107687778,LOC107678023,LOC107560521 coding downstream 281297 22315294 ~ 22351716 (+)
igsf9a LOC108277156 coding downstream 345923 22379920 ~ 22426821 (+)
vsig8a LOC108277295 coding downstream 672964 22706961 ~ 22766275 (+)
G272940 NA non-coding upstream 429879 21479900 ~ 21492672 (+)
LOC113544190 NA non-coding upstream 430475 21488112 ~ 21492076 (+)
G272803 NA non-coding upstream 932000 20990343 ~ 20990551 (+)
G272770 NA non-coding upstream 990968 20927622 ~ 20931583 (+)
G272470 NA non-coding upstream 1172904 20749361 ~ 20749647 (+)
G273226 NA non-coding downstream 3842 22037839 ~ 22038149 (+)
G273473 NA non-coding downstream 528107 22562104 ~ 22562325 (+)
G273600 NA non-coding downstream 767084 22801081 ~ 22840120 (+)
LOC117599377 NA non-coding downstream 958545 22992542 ~ 22994797 (+)
G273683 NA non-coding downstream 1003412 23037409 ~ 23038616 (+)
LOC113543995 NA other upstream 443671 21476087 ~ 21478880 (+)
LOC113544125 LOC100304632 other upstream 560807 21359519 ~ 21361744 (+)
G272408 NA other upstream 1379597 20540325 ~ 20542954 (+)
G272374 NA other upstream 1493408 20423399 ~ 20429143 (+)
G272367 LOC108276637 other upstream 1523604 20398280 ~ 20398947 (+)
tmem230a tmem230,tmem230a,LOC103035677,LOC105888828,LOC106565272 other downstream 335259 22369256 ~ 22374875 (+)
lrrtm4l1 lrrtm4l1,LOC108276585,LOC108433509,LOC107730422,LOC107553720 other downstream 588431 22622428 ~ 22665570 (+)
lhx6 lhx6,LOC107597616,LOC107685129 other downstream 1015815 23049812 ~ 23145567 (+)
rc3h2 rc3h2,LOC108276736,LOC107595546,LOC106561687 other downstream 1210563 23244560 ~ 23274653 (+)
LOC113543986 rabgap1,LOC107686418,LOC107744072 other downstream 1247564 23281561 ~ 23386107 (+)

Expression


Co-expression Network