G273473


Basic Information

Item Value
gene id G273473
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 22562104 ~ 22562325 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU324041
cagaactggaccatagagcagtggaagaaggtggtctggtctgatgaattacattttcttttacatcatgtggacgacccaggtgcgtgtgcgtcacttacctggggaagagatggcaccaggatgcactatgggaagaaggcaagccagcggaggcagtgtgatgctctgggaaatgttctgctgggaaaccttgggtcttggcattcatgtggatgttac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU324041 True 222 lncRNA 0.51 1 22562104 22562325

Neighbor

gene id symbol gene type direction distance location
igsf9a LOC108277156 coding upstream 135283 22379920 ~ 22426821 (+)
dpysl2b dpysl2b,dpysl2,LOC108277094,LOC108427246,LOC107687778,LOC107678023,LOC107560521 coding upstream 210388 22315294 ~ 22351716 (+)
bnip3lb bnip3lb,LOC108277095,LOC108427248,LOC103036208,LOC107687791,LOC107561399,LOC107678042 coding upstream 251551 22291081 ~ 22310553 (+)
ppp2r2ab ppp2r2a,ppp2r2ab,LOC108277296,LOC108427249,LOC107744137,LOC107720666,LOC107678035,LOC107687801 coding upstream 273071 22272066 ~ 22289033 (+)
LOC113543961 NA coding upstream 1088986 21468412 ~ 21473118 (+)
vsig8a LOC108277295 coding downstream 144636 22706961 ~ 22766275 (+)
atp6v1b2 atp6v1b2,LOC108277294,LOC103034689,LOC108433525,LOC107687718,LOC107678016 coding downstream 204901 22767226 ~ 22780287 (+)
itga2.2 itga2 coding downstream 230253 22792578 ~ 22837618 (+)
fstb LOC108276855,LOC108433530 coding downstream 290156 22852481 ~ 22863830 (+)
snx18b LOC108276851 coding downstream 386568 22948893 ~ 22957601 (+)
G273226 NA non-coding upstream 523955 22037839 ~ 22038149 (+)
G273258 NA non-coding upstream 579913 21981979 ~ 21982191 (+)
G273248 NA non-coding upstream 599237 21962664 ~ 21962867 (+)
G272940 NA non-coding upstream 1069432 21479900 ~ 21492672 (+)
LOC113544190 NA non-coding upstream 1070028 21488112 ~ 21492076 (+)
G273600 NA non-coding downstream 238756 22801081 ~ 22840120 (+)
LOC117599377 NA non-coding downstream 430217 22992542 ~ 22994797 (+)
G273683 NA non-coding downstream 475084 23037409 ~ 23038616 (+)
G273644 NA non-coding downstream 485596 23047921 ~ 23062345 (+)
LOC117599346 NA non-coding downstream 506612 23068937 ~ 23073938 (+)
tmem230a tmem230,tmem230a,LOC103035677,LOC105888828,LOC106565272 other upstream 187229 22369256 ~ 22374875 (+)
LOC113544129 LOC108276555,LOC108427250,LOC107687808,LOC107720650,LOC107744134,LOC107678044,LOC563710,LOC107560524 other upstream 528107 21922551 ~ 22033997 (+)
LOC113543995 NA other upstream 1083224 21476087 ~ 21478880 (+)
LOC113544125 LOC100304632 other upstream 1200360 21359519 ~ 21361744 (+)
G272408 NA other upstream 2019150 20540325 ~ 20542954 (+)
lrrtm4l1 lrrtm4l1,LOC108276585,LOC108433509,LOC107730422,LOC107553720 other downstream 60103 22622428 ~ 22665570 (+)
lhx6 lhx6,LOC107597616,LOC107685129 other downstream 487487 23049812 ~ 23145567 (+)
rc3h2 rc3h2,LOC108276736,LOC107595546,LOC106561687 other downstream 682235 23244560 ~ 23274653 (+)
LOC113543986 rabgap1,LOC107686418,LOC107744072 other downstream 719236 23281561 ~ 23386107 (+)
cdc37l1 LOC108276758,LOC108433523 other downstream 1375653 23937978 ~ 23940132 (+)

Expression


Co-expression Network