G273683


Basic Information

Item Value
gene id G273683
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 23037409 ~ 23038616 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU324287
gacagacagatagatagatagatagatagatagaCATGTAAAATAGCACTGATGgtctatatttacatatttaagtaTAAAGTGGAACTTCATTATCATCCACATCACTTTCAGCTTTCTGGTTTAATTCCACTTTTAGTCTTTAGGGGGTGGAGCCTAGTCTGGTAGGTGGAGTCTATAACAGGGGTTGTAGTGATATCAAACTACACTGCGGACAGAACTGATCCCAGTTGTCTGAGatggaaaaactttttttttagacagttctgttcttttgttcataaagagtttatattcttcagtatttgttattgtttacagctgcatttttacatttacagcatttattacaAGCTCTTATCCAGAGGGACTTGTAGTCAACAAAATTACACATCCTCATGCCAGTTCAGTAGGTCAGAAAGGCAAACACGCAGATCAAGAGATTTCCATTAGACAGACTTTCTATCAGGGCAGCTTCCTGTGCACTCAGAATGTAATTATAGTGAAAGATCTCTCAGCTGAGTGCAATTATTCCACATGATCAGTAAAGGTCAGTGTGACAGAACATGTCCGAATAGGAATTTATGTGAAATGTTTCtcataacaaaataacaaaaataaaaatcctaccTGTCATGCTGAATCATAGCTGAGAGTCAAACACATGACTCTCACTGATGAACAGCTGATGAACAGCTCACATGTTGAAGCATTGTGATTCAATTCCACCACAAACGCAACGGCTACATCTGTCAAAACTggaaagaagcagaaaaaaaggctCATACATGTGAGTCTGCTTTCATCGCTCAGCTAGAAGAGTCGATTCAAAGAGCCGACTCGTTCACAAACGACACGTCACTAATAAACAGCTGTGATttatttggaatgaaaacctgaagACACACCAGCTCTTTATGAATAAGACTGAAGAAATTTACTATGAAATGATGGAGAAGCTCTTCGTGCTTTGTTTAAAGCTGTAAAAGTTACAGAAAATCTGTTCATTCTTGCTTTGAATCTTTTCCTCAACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU324287 True 1034 lncRNA 0.37 2 23037409 23038616

Neighbor

gene id symbol gene type direction distance location
rasgef1bb LOC108276874,LOC108433534,LOC107597626,LOC107686427,LOC107595538 coding upstream 21183 23005004 ~ 23016226 (+)
snx18b LOC108276851 coding upstream 79808 22948893 ~ 22957601 (+)
fstb LOC108276855,LOC108433530 coding upstream 173579 22852481 ~ 22863830 (+)
itga2.2 itga2 coding upstream 199791 22792578 ~ 22837618 (+)
atp6v1b2 atp6v1b2,LOC108277294,LOC103034689,LOC108433525,LOC107687718,LOC107678016 coding upstream 257122 22767226 ~ 22780287 (+)
paqr3b paqr3b,LOC108276876,LOC108433513,LOC107713330,LOC107597624,LOC107744080 coding downstream 1850 23040466 ~ 23045078 (+)
rbm18 rbm18,LOC107686423 coding downstream 66061 23104677 ~ 23121707 (+)
ndufa8 ndufa8,LOC107686420 coding downstream 125093 23163709 ~ 23169517 (+)
si:ch211-243g18.2 LOC108277365,LOC108433518,LOC107744167,LOC107685187,LOC107686498,LOC107713290 coding downstream 181529 23220145 ~ 23232035 (+)
LOC113543956 gpr21,LOC108433543,LOC107686419,LOC101884949,LOC107744074,LOC107597614,LOC107595548 coding downstream 304180 23342796 ~ 23345808 (+)
LOC117599377 NA non-coding upstream 42612 22992542 ~ 22994797 (+)
G273600 NA non-coding upstream 197289 22801081 ~ 22840120 (+)
G273473 NA non-coding upstream 475084 22562104 ~ 22562325 (+)
G273226 NA non-coding upstream 999260 22037839 ~ 22038149 (+)
G273258 NA non-coding upstream 1055218 21981979 ~ 21982191 (+)
G273644 NA non-coding downstream 9305 23047921 ~ 23062345 (+)
LOC117599346 NA non-coding downstream 30321 23068937 ~ 23073938 (+)
G273719 NA non-coding downstream 96963 23135579 ~ 23135832 (+)
G273865 NA non-coding downstream 222430 23261046 ~ 23279789 (+)
G273880 NA non-coding downstream 247384 23286000 ~ 23333549 (+)
lrrtm4l1 lrrtm4l1,LOC108276585,LOC108433509,LOC107730422,LOC107553720 other upstream 371839 22622428 ~ 22665570 (+)
tmem230a tmem230,tmem230a,LOC103035677,LOC105888828,LOC106565272 other upstream 662534 22369256 ~ 22374875 (+)
LOC113544129 LOC108276555,LOC108427250,LOC107687808,LOC107720650,LOC107744134,LOC107678044,LOC563710,LOC107560524 other upstream 1003412 21922551 ~ 22033997 (+)
LOC113543995 NA other upstream 1558529 21476087 ~ 21478880 (+)
LOC113544125 LOC100304632 other upstream 1675665 21359519 ~ 21361744 (+)
lhx6 lhx6,LOC107597616,LOC107685129 other downstream 11196 23049812 ~ 23145567 (+)
rc3h2 rc3h2,LOC108276736,LOC107595546,LOC106561687 other downstream 205944 23244560 ~ 23274653 (+)
LOC113543986 rabgap1,LOC107686418,LOC107744072 other downstream 242945 23281561 ~ 23386107 (+)
cdc37l1 LOC108276758,LOC108433523 other downstream 899362 23937978 ~ 23940132 (+)
hsdl2 hsdl2,LOC107558693,LOC107744249,LOC107658673,LOC107685110 other downstream 1064457 24103073 ~ 24112853 (+)

Expression


Co-expression Network