LOC113543986 (rabgap1,LOC107686418,LOC107744072)


Basic Information

Item Value
gene id LOC113543986
gene name rabgap1,LOC107686418,LOC107744072
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 23281561 ~ 23386107 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU324491
GGTTGATGGTCACCTGACAGGAAGTTGACCGTTTATGGATGGTTTGTGGACGCAAAGTAGAGTCTACATTggactaaaattaaaaattaaaatgtctttaaaattaaaattaaaaattaaaatgtctttaaaattaaaatgaacttcTGCAGATTCTCATGGAGCTGCTTCACTTCACTTGTTGATAAAAAcgtaattttacttttttgtggcgtttccctccccctctctcagGCACATGAACCTGGCCGTACGACCCAAACCGCTCCCGGCGCTCGTCCGCAGCGGCGTCCCCGAAGCCCTCAGGGGGGAGGTGTGGCAACTCCTGGCTGGTTGCCATAACAACGACCATCAGGTTGAGGAGTACCGCACGCTCATTACGAAGGAATCACCTCAGGACAGTGCCATCACTCGAGACATTAATCGCACATTTCCAGCACACGACTACTTTAAGGACACGGGAGGCGACGGTCAGGACTCGCTGTATAAGATCTGTaaggtgagaaacacacacacacacacacacacacacacacacaaacaaacaaacaaacaaacaaactattaATATCAGATAAAGCTTTACATCAAAATTCTCACTAAGCTAACATTATTTCCTGCATTAGTTTCTTTACACCATCCTGGTTTTCAattctcgtttctgattggtcaggaggtgttgattcattttctataggttaatttaatacgttatcgtttctatagtaacagctcattcacagggactcgttcatatgttgaagttttcttaacatttatgtagcatttatggaaggagtctccagtgtcagaggtcaAGCCGTAACTTAACATCTCACTAAATTGTTTCGCAGacgtcccacaacattaaatgtaactataaacggataaaaagtacgatgtgttctttaatagagtaaaaactgtaatcatggCCAAATTGATGTGGtgttagaggggaaaaaaataaaacattcttaaaatgtactgttatagaaaagagtataaacagtataaaagaTTAACGCCGCTTCACTTTACACTTATACTcgcagtttatttaaaatgatcactCTCTCTAATTCAGGACCAAACTGCAGATTGAATCCTAAATGACTTCCACTTGGCTGtatagtgcactaggtagggtgtAGAAgcccctatgtagtgcacatactgtatgtagagTCACATGACTCTTGTCTGACCATTACTGTTGCCATAGCAACATCAGTTCGAGCTCTTAGCGCAGTGTTTAGACACGTTTCTGGTCCTGTATGAGTGCACCGGCGAGCGTGGGCAAGATGGCCGCCGAGCGCTCCGACTTTACTACCGGGGAATCTGAGTAATGATCGCCTCAGACGAAGTTCACGCAGGCAAACGGACGACctgacacacactttcacacatccgtatttgttaaataattactttttgatttttttttcccctaccgCCCGTTTTAAGGTCACTAGGTTCGTTGTGACGGTGGTGACGGATGAAGGATGCGAGGCCGAGTGTTTGATTTGCGTCTTAAGGCGCCTCTTAATAATTCACCACTCCTCCTCCGTGGTGTTTACCGCCATCACTCAGAGCGgcatggatttttttctttattgacCTCGTAATAATTCAGCTCGCTCACTGTACGCTCTGAGCACCCGGGGGACCTCGAGACGGCTCAATTAAGAGTTCACCAGGTTTAATACGGCTGCGCTTTGCCGGGCTGTGTTAAAAAATTTACGTAGTTTTTAACTCGACCAGAGAcgcacttttctttttttcttttcttttttttattacagtttcagccaaaaatgaaatcaatcaacctttttgttctttcaaagtttgcttctttagttttccGCTTATTTCGTAACATGTAACGAAAgcttatatgtaatatttttaacacttaAACTCACGTTAAgtatttttagtcatattaAAACTTTTATCGCAGCAATAATTCTGAAAATCTTAACGATAAACGCagcagaaatgaagaaagaaacaatGAGCCACTCCTTTAGAAGGCGTTTCTTTATACGAACAGATACGCCTCCCTTCAAAA
>XM_034312519.1
CGTTCGGGTTGTGTTTACGGCGCTGCTGCTGGTTTGTGCCATGTTCTGTCAAACCTCTgtggaataaaaacaaaaaaagtcttttGGGGAAACAGGTGATTCGGCTCACTGAGCGTCATTCATGAGTGCGTCCGGCTCGGTGTAGCAGTCATGGATGACATGGCCTCCGTGGGGAAAATCAGTGCCTCCTCTGACTCGGTGTCCACCCTGAACAGTGAGGACTTTGTCCTGGTGTCCCGCCTCGGGGACGAGACCCCGTCCACTAATAACGGCAGTGACGATGAAAAAACAGGCCTGAAGGTGATTTCTGAGGAAGGGGTCAGCTTTAAGattgtGGGGAACGGCAGTGAGCAGCAGTTGCAGAGGGAGCTCGAGGATGTGCTGATGGACCCGTCGGTGGCTGACGTGACGCCCGGATCGGACCACGTGGACAGGGGGGATCAGGGCTACCCCACCACTGCGGCTCCGCCTCAACCCTGTCCTGCACCTCCGAAACTGGAGATAGTGCTGCCCGTTCAGGGATCTCAGCGGGATGAGAGCTCGGCGATGAGTCCGGGGACGCCGCTGCTGGACGAGGACAGCGTGGTGTTCAGTAAGCTGACGTACCTGGGCTGTGCATCGGTTAACGCCCCCCGCAGTGAGGTGGAGGCGCTGCGGATGATGAGCATTCTTCGCAGCCAGTGCCAGTTGCCCCTAGACGTCACTCTCTCCGTACCTGGAGTCTCTGAGGGAACCGTCAGgttGCTGGACCCTCAGAGTGGGACTGAGATCGCTAACTACCCCATCTATAAGATCCTGTTCTGTGTTCGGGGTCATGATGGGACACCAGAGAGCGACTGTTTCGCCTTCACAGAGAGCCACTACAACTCAGAGATCTTCCGCATCCACGTCTTCCGCTGCGAGATCCAAGAAgcgGTCAGCAGAATACTCTACAGCTTCGCCACAGCCTTTCGGCGGTCAGCCAATAAGGCGTCGCTCACAGCTCAGGCTCCGCCCCTCACGCCAGACAGCGACGTTTTCACCTTCACCGTCAGTCTGGAGATCAAAGAGGATGATGGGAAGGGCACCTTCAGCGCCGTGTCAAAGGACAAGGACAGACAGAGCTTCAAGCTTCGTCCTGGGATGGACAAGAAGATCGTCATCTACGTCCAACAGACGTCTAACAAAGAGCTGGCCATTGAGAGgtgttTCGGCCTTCTCTTAAGCCCAGGGAAGAATGTGAGGAACAGTGACATGCACTTGTTAGACCTGgAGTCCATGGGGAAGAGTTCAGATGGTAAATCTTACATCATTACAGGGAGCTGGAATCCCAACACTCCTCAATTTCAGGCTGTCAATGAGGAGACGCCtaaagATAAGTTCATGTACATGACGACGGCGGTGGATCTAGTGATCACGGAGGTGGAGGAGCCGGTGCGCTTCCTGTTGGAGACGCGTGTGAGAGTGTGTCCGCCCACTGACAGGCTCTTCTGGCCTTTTAGCAAGCGCAGCTACACCGAGACCTTCTACTTAAAACTGCGACAGctgGAAAGGAAGAGTAACACGGACACGCTGTACGAGGTGGTGAGTTTAGAGAGCGAGAccgagagagagaagaagaaaacgACGGCGAGTCCCGGCATCCTGCCCTCCTCTTCGCACGGCTCCATGGCGCCCTCGCCTCCTGAGGATGACGAGGAGGAAGGTGAATGGTCCAGGGTTCtctaaaaaatctaaaatatcaGATCAGATTGTCTTTCCTGTTcctgGCACATGAACCTGGCCGTACGACCCAAACCGCTCCCGGCGCTCGTCCGCAGCGGCGTCCCCGAAGCCCTCAGGGGGGAGGTGTGGCAACTCCTGGCTGGTTGCCATAACAACGACCATCAGGTTGAGGAGTACCGCACGCTCATTACGAAGGAATCACCTCAGGACAGTGCCATCACTCGAGACATTAATCGCACATTTCCAGCACACGACTACTTTAAGGACACGGGAGGCGACGGTCAGGACTCGCTGTATAAGATCTGTaaggtgagaaacacacaCGATGAAGAGATCGGCTACTGTCAGGGCCAGTCCTTCCTGGCGGccgtgctgctgctacatatgCCGGAGGAACAGGCGTTTAGCGTTCTGGTGAAGATCATGTTTGACTACGGTCTCAGGGAACTCTTCAAACAGAACTTTGAAGACCTACACTGCAAGTTCTTTCAGCTGGAGAGActcatgcaggaatACATTCCAGATTTGTACTCGCACTTCTTAAGTATAGGTTTGGAAGCGCACATGTACGCCTCCCAGTGGTTCCTCACGCTCTTTACAGCCAAGTTTCCTCTCTACATGGTGTTTCACATCATCGACCTGCTGCTGTGTGAGGGAATCAGTGTCATATTTAATGTAGCTCTGGCTTTACtgaagACGTCGAAGGATGACCTTCTGCAGGCCGACTTCGAGGGAGCGCTGAAGTTCTTCCGTGTGCCGGTGCCCAAGCGGTACCGCTCCGAAGAGAACGCCAAGAAGCTCATGGAGCTCGCGTGTAGCATGAAGatcaGTCAAAAGAAGCTGAAGAAGTATGAGAAAGAGTATCACACGATGCGAGAACAACAAGAACAGCAAGAAGCCCCTATCGAGAGATATGAGAGGGAGAACCGGCGTCTGCAGGAAGCCAACATGCGTCTGGAGCAGGAGAACGATGACCTCGCTCACGAGCTGGTCAGCAGTAAGATCTCACTCAGGAAGGACCTGGACAACGCGGAGGAGAAGGCTGACGCTCTAAACAAAGAGCTCCTCATCACGAAACAGAAACTGATCGACTCGGAGGATGAGAAGAGACGGCTGGAGGATGAAGCGGCGCAGCTGAAGGAGATGTGCCGAAGAGAGCTGGACAAATCGGAGTCAGAGATCAAAAAGAACGGCTCCATCATCGGAGAATACAAACAGatcTGCTCCCAGCTAAGTGAACGACTTGAGAAACAGCAGATGGCTAACAGAGGAGAGCTGGAGAAGATCCGGatgaagGTGGAGGGCTGTGAGAAGTGCAGCGTGCTCTTCAGTAAAGAGGGCCGGCTGAAGGCTCTGAGAGCTCCTAAAGAGCTGAGTGAGGACGAGATTGACGAGGAGAAAGAAGCTCTGCAGGTGCAGCTCAGGGAGATGGAGCTGGAACTCGCTCAGACCAAACTGCAGCTGGTGGAGGCCGAGTGCAAGATCCAGgattTGGACCACCATTTGGCTCTGGCACTCAATGAAGTGCAAGCGGCTAAAAAGACCTGGTTCAACCGAACTTTAAGCTCCATTAAGACGGTGACGGGAGCTCAGGGCAAAGAGACCACTTAAAaatcacctgtctgtctctctgtctttctctccttctctctctctctctctctctccctctctctctctctctctcctctctatgGGTCAGTGTGATGAACTTCCACGGCACCCgaacagacctttttttttttttttttttttctttttttttttttttaaaaagatccAGATCTTTGCatagagtgaaaagaaaaacaccgAATATACTAAACAGAGGAGGCTTTAGCGCTAGGCTTTAtactactgacacacacacacacacacacacacacacacacacacacacaaaacattaacACCACACTCAAGCTACTGTTCTACTCCAGACTACTTGCACAAAATAAACCCACAAACATCAACAAACTAACAGCCTTCTTTTGGGAAGATGAGCTTTTATAATTTCCGTTTGATGATGAATTTATGTGAGCTTATAGGATTAATAtgttaggggtgtgtgtgtgtgtgtgtgtgcgcgtacgTACGCACTAAAGGACCCTTGTGCCATTGACTGTGAGTGACCATACACGACAGCGAGTTTTCATCATCTAAGAAGAGGTGCAAAGTAAAGaagcacatttatatataataaagaaaagtaatggcacccccCTTTTGCTAGTGCGTGCCTGTACTGGCAATAGCGATGTACACTAAAGAGAGGAGCGATGGTCTGAGAGGAAACAGAGAGCGTGAGGGAATGAAAAATGGAGGCCTTTATTAAAGAGAAGTAGCTCCTTTTATGATTAAAGGTGCCATCAGTGATTTTTAAGTTATCATATTTATcctctgtatttataaaatattcactaAGAGGAAAACTCCGGGTCTCTGACTGTAAAtaggagaagagagaaaaaaggaagtgacattttaataaaagtggGCCActaacatccaaccaatcaggataAGGCGGCGTGTGTACGTAAGGAAAAGCTCCGCCTCTATCGTAGGCATGTTTTGATGGCGTGATTATGTTTAATTGCTGAGTACACGTTTAATCCTTTCGCTGATACACCTATTGATGAGTGAAAGCTCGCACGCGAGTTCGATCCCTGTTTATTAGCATTAACTTTATCGTCAGTGGATCGGAGCTCGTCGGAGAGCTGCGTCCTGAAGCACTTATTTAGCGTGTGTATGAGAGaaaatgctcacacacacacacacacacacacacacacacacacacatatgctctGAGAAACGGTGAGCACAAACATGTGGTCGTCTCAGACcttgtgtgcgtgcgtgtgtgtatgtgtgcgtgcgtgtgtgtgtgtgtgtgcgtgtgcgtgcacAAAAAGGCTGTATAAAGAACACTCTGTGGGTTTTTAGGTTTTTGCACCTTACAGACATATTTATAACAGAATCTGGCTCGCTTGAGTTTGGTTGATGTCACAGGAAGCCCCACTTTTctcttgttaaaaaaagaaataactaaTTAAGAAGCAGGGGTCATTCCACGAGGCACTGGCGGCTTGTACATAAGAAGCATTaaagggttttgtttgtttgtttgtttgtttgtttgttttgtctgttttattttgtatttctacTCCATGGTAACGTTACTAATGTTGCCTCATTGTATACGTTGCTTTAAGGTTCTGTCTTTATTGTCGAAATGCTGTCTCATCTATTACATGCCAAAATTTATCCTCGTCCAGCATTACGTATGTATGAACATGGTAATAGTGTAGCTGCATTGTGTATACTTCATCAATTTCAATATAAAGCTACCAAACACAAA

Function

symbol description
rabgap1 Predicted to enable GTPase activator activity. Predicted to act upstream of or within positive regulation of GTPase activity.

GO: NA

KEGG:

id description
K20284 RABGAP1, GAPCENA; Rab GTPase-activating protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
TU324491 False 2077 TUCP 0.41 3 23321571 23360503
XM_034312519.1 True 5071 mRNA 0.49 26 23281561 23386107

Neighbor

gene id symbol gene type direction distance location
si:ch211-243g18.2 LOC108277365,LOC108433518,LOC107744167,LOC107685187,LOC107686498,LOC107713290 coding upstream 49526 23220145 ~ 23232035 (+)
ndufa8 ndufa8,LOC107686420 coding upstream 112044 23163709 ~ 23169517 (+)
rbm18 rbm18,LOC107686423 coding upstream 159854 23104677 ~ 23121707 (+)
paqr3b paqr3b,LOC108276876,LOC108433513,LOC107713330,LOC107597624,LOC107744080 coding upstream 236483 23040466 ~ 23045078 (+)
antxr2b LOC108276875,LOC108433535,LOC107685134,LOC107597625,LOC107744079,LOC107686426 coding upstream 242012 23019928 ~ 23039549 (+)
sh2d3ca sh2d3ca,LOC108277244,LOC108433546,LOC107713320,LOC107597612,LOC107744235 coding downstream 180607 23566714 ~ 23618521 (+)
urm1 urm1 coding downstream 238030 23624137 ~ 23640347 (+)
cercam cercam,LOC107744239,LOC107597609,LOC107685123 coding downstream 276512 23662619 ~ 23676630 (+)
sardh sardh coding downstream 297443 23683550 ~ 23721518 (+)
fam163ba fam163b,LOC107595554,LOC107713289,LOC107685121,LOC107597608 coding downstream 369010 23755117 ~ 23777033 (+)
G273865 NA non-coding upstream 1772 23261046 ~ 23279789 (+)
G273719 NA non-coding upstream 145729 23135579 ~ 23135832 (+)
LOC117599346 NA non-coding upstream 207623 23068937 ~ 23073938 (+)
G273644 NA non-coding upstream 219216 23047921 ~ 23062345 (+)
G273683 NA non-coding upstream 242945 23037409 ~ 23038616 (+)
G273900 NA non-coding downstream 10701 23396808 ~ 23398531 (+)
G274161 NA non-coding downstream 289536 23675643 ~ 23677227 (+)
G274186 NA non-coding downstream 465890 23851997 ~ 23852218 (+)
G274192 NA non-coding downstream 473717 23859824 ~ 23860703 (+)
G274193 NA non-coding downstream 482747 23868854 ~ 23869197 (+)
rc3h2 rc3h2,LOC108276736,LOC107595546,LOC106561687 other upstream 6908 23244560 ~ 23274653 (+)
lhx6 lhx6,LOC107597616,LOC107685129 other upstream 135994 23049812 ~ 23145567 (+)
lrrtm4l1 lrrtm4l1,LOC108276585,LOC108433509,LOC107730422,LOC107553720 other upstream 615991 22622428 ~ 22665570 (+)
tmem230a tmem230,tmem230a,LOC103035677,LOC105888828,LOC106565272 other upstream 906686 22369256 ~ 22374875 (+)
LOC113544129 LOC108276555,LOC108427250,LOC107687808,LOC107720650,LOC107744134,LOC107678044,LOC563710,LOC107560524 other upstream 1247564 21922551 ~ 22033997 (+)
cdc37l1 LOC108276758,LOC108433523 other downstream 551871 23937978 ~ 23940132 (+)
hsdl2 hsdl2,LOC107558693,LOC107744249,LOC107658673,LOC107685110 other downstream 716966 24103073 ~ 24112853 (+)
LOC117599389 NA other downstream 840047 24226154 ~ 24232819 (+)
trappc13 trappc13,LOC107667267,LOC107726564 other downstream 1094492 24480599 ~ 24498642 (+)
erbin erbin,erbb2ip other downstream 1143871 24529978 ~ 24639642 (+)

Expression


Co-expression Network