G274022


Basic Information

Item Value
gene id G274022
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 23274839 ~ 23277850 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU324663
TCATGTTTAATGTCTTCTCtaaattcatctttagtaaaagTGTAagaatgtattaattttttttgtggataCAGCACCTGGTTtactgcttatttatttaaaaaatatatatattttttaatttttagttgAATTATCTTTAGACTCAACATTTCAAAATTCCAGTGGAACAGTGATGTGAAATCAGCGCCTATGGGGGCACTTACTTTTGCACATTGAGCGCTACTGTAGCGAGAAGCGTTCTCACTAGTCCAACACTGTCAACTATCTAGAGCTTTAATATGTACTTCATATTAATCTTGACCAGAAATTATGGAAGAAAGCGaagtttaaactttaaacagtCAAGAGATGATCTGCATCTTTtaataaaagacacacacacacacacacacacacacaggcgatACAATTCAACACTGGGACACCAGTTACCATAAAACTGGTGGAAAGCGTAACAAAAAAGGTGCCATTATTTTAGGCAAAAAGCCCTACCACATTCCTGCATCCACGTTACATCTGAAAAAATTTACCCTATTATAAATAGGAGACGTTTCCTTTAAAGCGgcgtaacacacactcctctgatCTCACTGTCGTCCGAGTGAAGgacaacagaaaagaaaaaagattcaGTGCACAAGactgcagaagaagaagaaaagaagaagaagaagaagaagacccGTTTCAGGAGTTCTGATCATCACCCAGCGCTCCATCAACCTCGATTTTAAACAGGAAATGCAGAGCCGATGGTTACGTTTATTTCCAGTGAccaaaacaaaaggaaaaataagAATTTCCTGATACAAAATACTCCGACACACAACTTCACGGAAGTTAGCAGCGATGTCGCATTCGAACACGAGGACCAGACAGGggtagttatttatttttttttaaaatcagaaatgGGATAAAAGCAGCTCTGGACACAAAGCGTGAAACGAGACGCGGTCTGCCGAAGTGCTGAAGCTTGGACGAACAGCGCGacctggtttatacttctgcgtgtccactagagggcagaaAAATGAAGAACTCAAGGAAAACGAAGTAAAAGTCGAGGAGAAATGTTCTGAAATCGTCCGGCTCTTGCGTTTTCCGGAAACACTGCGTACGTTAGTCCGTACAGCGAGTATATTTACCACAGAACATTTTCAACAACAAATTCTGAGCACTGCGTCTTCAAAACTTTCACAGCTCTTtaagcttccaaagcttcacaGCTCAGAGACATCTCACAAGGTTTGCTAAGATACATCTCTGATGTTTATCTCTGGAGCGTTTACCGAGACACACTGTAAAAAACATCATTGCGAGTGTAGCAAAAGAACCGGAAACGAGAGAGCCGCACTAAATAGAATGCATAAAGTATAACGATAGAATAcaacaagccccgcccactgcgTCCCTGAAACGCAGTCTATGTCTCAAACTTTGACCTTTATTAGCACTTCAGCTAACTGACATCAACTGAAACATTAAGTTTTATATACTATTTTGTATACAGTAGAGGTGTAACGATACCGTGCATCACATCGTATCGCTCAATAGGAGGCTTTCGATTCGATACATTTgtacactgaatacatttaaCAGGCTGCATAATAAAGTCGTTATAACACACTGCTTCTATCATGAGAGGTCTAAAACATTTCAGCTTAAATCAAGCTTACACTCATTACCTCATATCTGGAATTtcgaaacacaaacaaacaaacaaaacatttcagctAAGAAGTGCACCGTGTTTCATGAGCATGCATTACGCTAGCATACTGGTGTGTGCGCTCTTTCCAGTCAGGTATAAGGAAGCACATCAGCTTCCCGTTAAGCTGCGACGCTGACGGCTAGCGAGTGGTGGACTGAAAATGTTACACAGACTCTAAAACCGCGCACGCGTCCACGCTTCTGCACGGAACTAGACGAAAACAGGAAGCAGCACGCCCTGTTCATAGCTGCAGGTATGAGACTCTAGTCAGTAAAGCGGAGAACGCAgcattcaaaaacacatccagGGCTACAGAGAGCTGCGTAACCGACAGATAGATaacagcagaataaaaaaattaaacacttcagacaCGCCCCCTTTAGAGTCACACCACTGAAAGCTTGGCCAGagagctaatgtttaattagccatgcttaaatttattttgttatacaCTGCTACGAGTCTGAACAGATACAGTCATTGTTACTTACGATTCAATTTAACCAACTGAAAACAGAAACCTAAAGCACATTTCTCAGCCAACGcttatttttgaaaatgcatCGTGTTTGAAACGCCACTGCATGGAAATCGTATCGAATTTGAATTCtgtgtatcgttacacctctAACATCTAGAGACGAGCTGTATctcaacatctctctctctcatatcttATTTGATAGATGTCAATTTTGCAGATTTATCACAACCGGACACACCTCCTCGCCTCAACCAATCAGCGTTCGTTTGAAGGCTGGCTTAACACACAGctccatagacacacacacacgattagcTGTTAGGATTTAAGAGGACTGCGCACCTGTTAATCGGTGTGGCGCGTGGAAGTGCGTCTCCGTGTTGCGACACAAATACGCTTCaatgcagaagtataaaccagactGTAGGAGAAGTGCTGCGTTTTGCTAACACCTTAAACACTCGTTTCAACAACTCCATCAAAAGCAACACTTCAAAGTTCAAGCACAAGACGCCGAAATTCTCAAAAGATCAATCAAGAACATTTTTCCCCACTCACACCAAATGAAGTCGACACGTTCGGTGTGTCACACCTACACTAATTACGCTAACAAGTCTGTCTTTAGTGAAAATCGGCGTCTTTTTCACGTGCCGATGCGGTTTAGGACACAGCGAGACTTCCTGTCttctataaacatgaactaaaCTTCACTGTAGAGCTGAATGTGAGAAATTTATAAATGGAGGTTTGCTGTTCCTTTAAATGAATAGGACACcgttacc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU324663 True 2989 lncRNA 0.41 2 23274839 23277850

Neighbor

gene id symbol gene type direction distance location
morn5 morn5 coding downstream 111373 23150003 ~ 23163466 (-)
mrrf mrrf coding downstream 170181 23085312 ~ 23104658 (-)
LOC113544094 anxa3 coding downstream 204791 23061736 ~ 23070048 (-)
anxa3b anxa3 coding downstream 218046 23047904 ~ 23056793 (-)
LOC113544175 LOC108276592 coding downstream 286247 22963040 ~ 22988592 (-)
strbp strbp,LOC107744073,LOC107686417 coding upstream 116683 23394533 ~ 23507502 (-)
dbh dbh coding upstream 445877 23723727 ~ 23745533 (-)
exd3 exd3 coding upstream 595843 23873693 ~ 23935370 (-)
ak3 ak3,LOC107658667,LOC107685112,LOC107744244,LOC107713310 coding upstream 666525 23944375 ~ 23956050 (-)
ptbp3 ptbp3,LOC107658670,LOC107744247 coding upstream 763181 24041031 ~ 24095321 (-)
G274031 LOC108276736 non-coding downstream 3335 23271002 ~ 23271504 (-)
G274023 NA non-coding downstream 12907 23261162 ~ 23261932 (-)
G274019 rc3h2,LOC108276736,LOC106561687 non-coding downstream 16566 23256532 ~ 23258273 (-)
G273994 NA non-coding downstream 79272 23186454 ~ 23195567 (-)
G273989 NA non-coding downstream 109905 23163557 ~ 23164934 (-)
G274058 NA non-coding upstream 114736 23392586 ~ 23393133 (-)
G274137 NA non-coding upstream 342563 23620413 ~ 23620704 (-)
G274149 NA non-coding upstream 363211 23641061 ~ 23641283 (-)
G274294 NA non-coding upstream 387011 23664861 ~ 23666329 (-)
G274290 NA non-coding upstream 443134 23720984 ~ 23747180 (-)
LOC113544130 rusc2 other downstream 2067669 21189969 ~ 21207170 (-)
drg1 drg1,LOC107744129,LOC107567440,LOC107713382,LOC107555524 other downstream 2493765 20772560 ~ 20781074 (-)
pmaip1 NA other downstream 3160380 20111448 ~ 20114459 (-)
G272551 NA other downstream 3193928 20079415 ~ 20080911 (-)
ppp3ccb ppp3ccb,LOC103046193,LOC108440561,LOC107720725,LOC107678020,LOC107553709,LOC107586120,LOC107705087 other downstream 3942649 19246977 ~ 19332190 (-)
G274342 slc27a4 other upstream 520509 23798359 ~ 23802284 (-)
nrarpa nrarp,nrarpa other upstream 581455 23859305 ~ 23863268 (-)
inip inip,LOC107571239,LOC107658659,LOC107558675 other upstream 973698 24251548 ~ 24253312 (-)
LOC113544170 plac8 other upstream 1019626 24297476 ~ 24301032 (-)

Expression


Co-expression Network