G274192


Basic Information

Item Value
gene id G274192
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 23859824 ~ 23860703 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU324847
caagTACACAACAGACAATAAAACAACCTGGAGCTTTTTGTcgtgttcctttttttttctatttagaaaaaaattaaatgttgacACAAAGCCAACGAGTGAACAGTCATCAGTGCaactttttttcaaaaaagaaaaagtaaaaaagttatCAAGTTTAAGACATGCAATGcatatttaatcttttattcGGATCGCCTCGGACTCTCGGATGTTACGCTACtccaggttttattttatttatttatttagttttacttAAAGAAACGTTCTTAAGTCTAACCAGGGCTTATCAACGGGGCCAGACAAGCAAGAACCAGTTCAACAGTGGTAtgcatgcaacacacacacacacctacacacctacacacacacacctatccacccacacacacacacacacacacattcaggagGTTTCATACAGATCActataactgcacatttcctcctCTTACACTCACTGttggcttttaaaaaaagaaaaacaacaaaaacatcaatGGAAGCAGCATTGAAACACATCAGGCTGATACTCAAACACAAACGCAGGTCTGGTCCTTGTgtgagtttctttttttcttaaatctgaaGATTTTTCATCCCTGCAATAAGTCACACAACAGTCTTTCTTTAACAGTATGTGAGTCGAGTGGTGCTCAGTAGTCACttgtgatttctctctctctctctctctctctctctctctctctgtctctctttgcaGCCTCAAATCCTGCAGTTACCCGAGCAGGCACGAGGGGGCgtgaaataaactaaaattaaaaaattaataataataattaaaaagaaacaaaaactaaaataaaaaataaaggctCCGTGATTTTAATGTGCAACAAAATCTCCCTGCATTTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU324847 True 880 lncRNA 0.37 1 23859824 23860703

Neighbor

gene id symbol gene type direction distance location
ambp ambp coding upstream 14429 23835167 ~ 23845395 (+)
ptgdsa lcn2 coding upstream 28299 23815676 ~ 23831525 (+)
slc27a4 slc27a4,LOC107658662,LOC107744240,LOC107685116,LOC107713315 coding upstream 49995 23789432 ~ 23809829 (+)
swi5 swi5 coding upstream 73041 23781356 ~ 23786783 (+)
fam163ba fam163b,LOC107595554,LOC107713289,LOC107685121,LOC107597608 coding upstream 82791 23755117 ~ 23777033 (+)
ugcg ugcg,LOC107571241,LOC107558686,LOC107713309,LOC107658668 coding downstream 110735 23971438 ~ 24011050 (+)
LOC113544070 kiaa1958,LOC107683261,LOC106568575 coding downstream 373057 24233760 ~ 24252068 (+)
cops4 cops4,csn4,LOC107685106,LOC107558694 coding downstream 415379 24276082 ~ 24296725 (+)
cwc27 cwc27,LOC107744252,LOC107713303 coding downstream 449328 24310031 ~ 24359123 (+)
ppwd1 ppwd1 coding downstream 596333 24457036 ~ 24465100 (+)
G274186 NA non-coding upstream 7606 23851997 ~ 23852218 (+)
G274161 NA non-coding upstream 182597 23675643 ~ 23677227 (+)
G273900 NA non-coding upstream 461293 23396808 ~ 23398531 (+)
G273880 NA non-coding upstream 526275 23286000 ~ 23333549 (+)
G273865 NA non-coding upstream 580035 23261046 ~ 23279789 (+)
G274193 NA non-coding downstream 8151 23868854 ~ 23869197 (+)
G274239 NA non-coding downstream 84913 23945616 ~ 23946507 (+)
G274289 NA non-coding downstream 246945 24107648 ~ 24110738 (+)
G274431 NA non-coding downstream 264033 24124736 ~ 24125213 (+)
G274457 lin54 non-coding downstream 397204 24257907 ~ 24261576 (+)
LOC113543986 rabgap1,LOC107686418,LOC107744072 other upstream 473717 23281561 ~ 23386107 (+)
rc3h2 rc3h2,LOC108276736,LOC107595546,LOC106561687 other upstream 585171 23244560 ~ 23274653 (+)
lhx6 lhx6,LOC107597616,LOC107685129 other upstream 714257 23049812 ~ 23145567 (+)
lrrtm4l1 lrrtm4l1,LOC108276585,LOC108433509,LOC107730422,LOC107553720 other upstream 1194254 22622428 ~ 22665570 (+)
tmem230a tmem230,tmem230a,LOC103035677,LOC105888828,LOC106565272 other upstream 1484949 22369256 ~ 22374875 (+)
cdc37l1 LOC108276758,LOC108433523 other downstream 77275 23937978 ~ 23940132 (+)
hsdl2 hsdl2,LOC107558693,LOC107744249,LOC107658673,LOC107685110 other downstream 242370 24103073 ~ 24112853 (+)
LOC117599389 NA other downstream 365451 24226154 ~ 24232819 (+)
trappc13 trappc13,LOC107667267,LOC107726564 other downstream 619896 24480599 ~ 24498642 (+)
erbin erbin,erbb2ip other downstream 669275 24529978 ~ 24639642 (+)

Expression


Co-expression Network