cdc37l1 (LOC108276758,LOC108433523)


Basic Information

Item Value
gene id cdc37l1
gene name LOC108276758,LOC108433523
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 23937978 ~ 23940132 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU324880
AGGAGGGGTATCTGGACGTCTTCCACACTGAACTCGAGGCCTTTAAACACCGAGTGAGAGAGTACGCCGTGAAGCCCAAAGTGGACACGCCCAAAGCGCCGGAGCAGCAGTGCACGCCGTCCAGCTGCCGACTCGACCCGAAAGAAGTGCTGGAGTCTCTGCCTCCTGAACTGAAGGCGTGTATCCAGTCACAGGACATGCACATCCTCCAGAATGTTCTCAGCACCATGAAcccacaggtggcgGAGTATCATATAAAGCGATGTTTGGAGGCGGGGCTGTGTTCACATCCTGGGCGGGGCTCTAAAGACGAGGACACAGAAACAGAGGATCAGAGGATGATGGAGAcgttctaacacacacacacacacacacacacacacacacacacacacacacgccgtcTCTCGCTGGTGTTCAGGACAATGATGTTGAAGTTTGTGTGAAAATCGCGTGAAGATCAGACGAGTGAACACGACCTTCATCctggaggagaggaagaagagaagaaggaggagaagatgagaggaagaggaggaagaggaggaggaacagAACGGCTGCCATCAGagactttttgtttgtttgtttgtttgtttgtttgtttgttttttggatcCACGTGTGAACGTGTGCTGCACTTTATATCTGATTGAGAAGATAGTATATAAAAATAGAGCAAAGATAGGACGAGGTATTTTTGTGCACATTTTGTTACGTTTCTGTCGTGAGTTCGAGGCGTGACAGAAACACTGATTTAtgttttcactattttttacaggggttttgttttgcttttttctgtcAGAGCTTCTTTAGGGACGTGAAATCATTCTGTAAAACGTCTTTAACGTGAAATTTCTTTAACCTTCTCACATGGTTTCCCTTCTTTCCCTTTATTTACGtttttaacataaaatgcataaattaacTGATGACGCTTTTTCACCTCGTAGtgcattttatgtttaaaaaataactttaaaaaagggATCTtcatcatttttacttttttaactgTCCGTTTCAAACGTTTTCCaaatcattttgactttttcttACCGTCTCAAatgatttcttttcttaaattttttcAAACATAAAACGCACGTCACAGGAAAGTAATTAATGGTGCTTATTCACCAAGTAGcgca
>XM_034312838.1
CTCGCGTCTGATCTACTCCGTCTTTTCTCTCCGTCTCCTTTACGTAAGGCGGGACAGGAGGGGTATCTGGACGTCTTCCACACTGAACTCGAGGCCTTTAAACACCGAGTGAGAGAGTACGCCGTGAAGCCCAAAGTGGACACGCCCAAAGCGCCGGAGCAGCAGTGCACGCCGTCCAGCTGCCGACTCGACCCGAAAGAAGTGCTGGAGTCTCTGCCTCCTGAACTGAAGGCGTGTATCCAGTCACAGGACATGCACATCCTCCAGAATGTTCTCAGCACCATGAAcccacaggtggcgGAGTATCATATAAAGCGATGTTTGGAGGCGGGGCTGTGTTCACATCCTGGGCGGGGCTCTAAAGACGAGGACACAGAAACAGAGGATCAGAGGATGATGGAGAcgttctaacacacacacacacacacacacacacacacacacacacacacacgccgtcTCTCGCTGGTGTTCAGGACAATGATGTTGAAGTTTGTGTGAAAATCGCGTGAAGATCAGACGAGTGAACACGACCTTCATCctggaggagaggaagaagagaagaaggaggagaagatgagaggaagaggaggaagaggaggaggaacagAACGGCTGCCATCAGagactttttgtttgtttgtttgtttgtttgtttgtttgttttttggatcCACGTGTGAACGTGTGCTGCACTTTATATCTGATTGAGAAGATAGTATATAAAAATAGAGCAAAGATAGGACGAGGTATTTTTGTGCACATTTTGTTACGTTTCTGTCGTGAGTTCGAGGCGTGACAGAAACACTGATTTAtgttttcactattttttacaggggttttgttttgcttttttctgtcAGAGCTTCTTTAGGGACGTGAAATCATTCTGTAAAACGTCTTTAACGTGAAATTTCTTTAACCTTCTCACATGGTTTCCCTTCTTTCCCTTTATTTACGtttttaacataaaatgcataaattaacTGATGACGCTTTTTCACCTCGTAGtgcattttatgtttaaaaaataactttaaaaaagggATCTtcatcatttttacttttttaactgTCCGTTTCAAACGTTTTCCaaatcattttgactttttcttACCGTCTCAAatgatttcttttcttaaattttttcAAACATAAAACGCACGTCACAGGAAAGTAATTAATGGTGCTTATTCACCAAGTAGcgcattttatgtaaaaaaaaaaaaa

Function

NR:

description
PREDICTED: hsp90 co-chaperone Cdc37-like 1 isoform X2

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU324880 False 1154 lncRNA 0.43 3 23938033 23940111
XM_034312838.1 True 1230 mRNA 0.43 3 23937978 23940132

Neighbor

gene id symbol gene type direction distance location
ambp ambp coding upstream 92583 23835167 ~ 23845395 (+)
ptgdsa lcn2 coding upstream 106453 23815676 ~ 23831525 (+)
slc27a4 slc27a4,LOC107658662,LOC107744240,LOC107685116,LOC107713315 coding upstream 128149 23789432 ~ 23809829 (+)
swi5 swi5 coding upstream 151195 23781356 ~ 23786783 (+)
fam163ba fam163b,LOC107595554,LOC107713289,LOC107685121,LOC107597608 coding upstream 160945 23755117 ~ 23777033 (+)
ugcg ugcg,LOC107571241,LOC107558686,LOC107713309,LOC107658668 coding downstream 31306 23971438 ~ 24011050 (+)
LOC113544070 kiaa1958,LOC107683261,LOC106568575 coding downstream 293628 24233760 ~ 24252068 (+)
cops4 cops4,csn4,LOC107685106,LOC107558694 coding downstream 335950 24276082 ~ 24296725 (+)
cwc27 cwc27,LOC107744252,LOC107713303 coding downstream 369899 24310031 ~ 24359123 (+)
ppwd1 ppwd1 coding downstream 516904 24457036 ~ 24465100 (+)
G274193 NA non-coding upstream 68781 23868854 ~ 23869197 (+)
G274192 NA non-coding upstream 77275 23859824 ~ 23860703 (+)
G274186 NA non-coding upstream 85760 23851997 ~ 23852218 (+)
G274161 NA non-coding upstream 260751 23675643 ~ 23677227 (+)
G273900 NA non-coding upstream 539447 23396808 ~ 23398531 (+)
G274239 NA non-coding downstream 5484 23945616 ~ 23946507 (+)
G274289 NA non-coding downstream 167516 24107648 ~ 24110738 (+)
G274431 NA non-coding downstream 184604 24124736 ~ 24125213 (+)
G274457 lin54 non-coding downstream 317775 24257907 ~ 24261576 (+)
G274583 NA non-coding downstream 462891 24403023 ~ 24491201 (+)
LOC113543986 rabgap1,LOC107686418,LOC107744072 other upstream 551871 23281561 ~ 23386107 (+)
rc3h2 rc3h2,LOC108276736,LOC107595546,LOC106561687 other upstream 663325 23244560 ~ 23274653 (+)
lhx6 lhx6,LOC107597616,LOC107685129 other upstream 792411 23049812 ~ 23145567 (+)
lrrtm4l1 lrrtm4l1,LOC108276585,LOC108433509,LOC107730422,LOC107553720 other upstream 1272408 22622428 ~ 22665570 (+)
tmem230a tmem230,tmem230a,LOC103035677,LOC105888828,LOC106565272 other upstream 1563103 22369256 ~ 22374875 (+)
hsdl2 hsdl2,LOC107558693,LOC107744249,LOC107658673,LOC107685110 other downstream 162941 24103073 ~ 24112853 (+)
LOC117599389 NA other downstream 286022 24226154 ~ 24232819 (+)
trappc13 trappc13,LOC107667267,LOC107726564 other downstream 540467 24480599 ~ 24498642 (+)
erbin erbin,erbb2ip other downstream 589846 24529978 ~ 24639642 (+)
zfand5b zfand5,LOC108277070,LOC108428885,LOC107742939,LOC107726558,LOC107705050,LOC107667265 other downstream 659730 24599862 ~ 24658701 (+)

Expression


Co-expression Network