G274239


Basic Information

Item Value
gene id G274239
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 23945616 ~ 23946507 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU324897
tcgctgtggtgtaagaggaataaaacacttggggacgtgctgttataggaaaataatccacttcagagtggtgacagtaactccgcttcatcacaccgtCCTGTCACTCAGCATTTTACTACAGCAAGCAATACAAGAGTCATTTTACTCAAAAGAGTCATTTTACTCAAAAGAGTCATTTTGCTCAAAAGAGTCATTTTGCTCAAAAGAGTCATTTTGCTCAAAAGAGTCATTTTCTTAAACCGTCATTTTGGTAAAAAGTTCCATGTTGGTAAAAAGTTGGTGCTAACAGTAGCTCTGCTAACAGCTCATAAGAAATGGCGCCCCACCTACCTGTAATACTCCAGAACCGGTTGAGTCTGGGTTTCATACGCCTTCAGTCTGCGGGTCACCGTTTCAGGCGTGTCATCATCTCTCTGCGTCAACGGCTCACCTGTGACATCATCAAGACCCTGCggtgaacacaacacacaacacacactgagccaTGATCATTtaatcatcaacacacacacacacacacaattaaatagCATAGTCAAATAAAGaccttaattattattattattttgagttTGCACTGTTTATGGCAAATC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU324897 True 596 lncRNA 0.41 2 23945616 23946507

Neighbor

gene id symbol gene type direction distance location
ambp ambp coding upstream 100221 23835167 ~ 23845395 (+)
ptgdsa lcn2 coding upstream 114091 23815676 ~ 23831525 (+)
slc27a4 slc27a4,LOC107658662,LOC107744240,LOC107685116,LOC107713315 coding upstream 135787 23789432 ~ 23809829 (+)
swi5 swi5 coding upstream 158833 23781356 ~ 23786783 (+)
fam163ba fam163b,LOC107595554,LOC107713289,LOC107685121,LOC107597608 coding upstream 168583 23755117 ~ 23777033 (+)
ugcg ugcg,LOC107571241,LOC107558686,LOC107713309,LOC107658668 coding downstream 24931 23971438 ~ 24011050 (+)
LOC113544070 kiaa1958,LOC107683261,LOC106568575 coding downstream 287253 24233760 ~ 24252068 (+)
cops4 cops4,csn4,LOC107685106,LOC107558694 coding downstream 329575 24276082 ~ 24296725 (+)
cwc27 cwc27,LOC107744252,LOC107713303 coding downstream 363524 24310031 ~ 24359123 (+)
ppwd1 ppwd1 coding downstream 510529 24457036 ~ 24465100 (+)
G274193 NA non-coding upstream 76419 23868854 ~ 23869197 (+)
G274192 NA non-coding upstream 84913 23859824 ~ 23860703 (+)
G274186 NA non-coding upstream 93398 23851997 ~ 23852218 (+)
G274161 NA non-coding upstream 268389 23675643 ~ 23677227 (+)
G273900 NA non-coding upstream 547085 23396808 ~ 23398531 (+)
G274289 NA non-coding downstream 161141 24107648 ~ 24110738 (+)
G274431 NA non-coding downstream 178229 24124736 ~ 24125213 (+)
G274457 lin54 non-coding downstream 311400 24257907 ~ 24261576 (+)
G274583 NA non-coding downstream 456516 24403023 ~ 24491201 (+)
G274624 NA non-coding downstream 544908 24491415 ~ 24491856 (+)
cdc37l1 LOC108276758,LOC108433523 other upstream 5484 23937978 ~ 23940132 (+)
LOC113543986 rabgap1,LOC107686418,LOC107744072 other upstream 559509 23281561 ~ 23386107 (+)
rc3h2 rc3h2,LOC108276736,LOC107595546,LOC106561687 other upstream 670963 23244560 ~ 23274653 (+)
lhx6 lhx6,LOC107597616,LOC107685129 other upstream 800049 23049812 ~ 23145567 (+)
lrrtm4l1 lrrtm4l1,LOC108276585,LOC108433509,LOC107730422,LOC107553720 other upstream 1280046 22622428 ~ 22665570 (+)
hsdl2 hsdl2,LOC107558693,LOC107744249,LOC107658673,LOC107685110 other downstream 156566 24103073 ~ 24112853 (+)
LOC117599389 NA other downstream 279647 24226154 ~ 24232819 (+)
trappc13 trappc13,LOC107667267,LOC107726564 other downstream 534092 24480599 ~ 24498642 (+)
erbin erbin,erbb2ip other downstream 583471 24529978 ~ 24639642 (+)
zfand5b zfand5,LOC108277070,LOC108428885,LOC107742939,LOC107726558,LOC107705050,LOC107667265 other downstream 653355 24599862 ~ 24658701 (+)

Expression


Co-expression Network