G274294


Basic Information

Item Value
gene id G274294
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 23664861 ~ 23666329 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU324966
CGATCACTGACTTATTCTCAGCCATGAGGAGGTTCAGAGTGTCCGGGTTGGTCAGGACGTTGTCTGTATCTGCAAACTACAGaccacaaatcacacacacacacacacacacacacacataacataaAATTACCCAACAACTCAGGTAACTGAGCAGAAGTGAGTATGAGAGTCACAGTACTGGAGATTTTATTCAAAATTCAAAGAGACGGTTTCTTTATTGTTTGAGACAGgttataggaaattaaaaacagtatgtgtgtgtgtgtgtgtgtgtgtgtgaggccacAGATGATTAACTTTACCCTACCAGGACATAATCAGCCCAGCGTTTCTTGGCAAAGTTCAGCGCTGCCTGTTTGAGCCTCATGATGTGTTCATAGCGACCGTTACTCCAGTGTTTAGGCCCCATTTCCCCTGCATAAGACctgcagagggagagaaaacacTCACAACCCTCCACTTTATACACCACGGCTGAAGAAAcgagaaaaacacacaagatGATGTAATTGTTTACCACCGAATAAATACTGAGactcacactgagacacacactgagactcacactgagacacacactgagacacactctGGCAGGTTAAAGCATGTCCACTCATTCCTGAGCTCAGAGAACAGAGCGAGTGAATGTCTGCCTCCCGGGGCAGCTGGGATACGACGCCTCAATCACTGACCCACTCAGACATGTtttaaaggaggcgtggcctctgtgtgtgtcggtctcagtgaaggaggcgtggcctctgtgtgtgtcagtctcagtgaaggaggcgtgtcctctgtgtgtcagtctcagtgaaggaggcgtggcctctgtgtgtgtcagtctctgtgaaggaggcgtggcctctgtggctgtcagtctcagtgaaggaggtgtggtctctgtgtgtgtcagtctcagtgaaggaggcgtggcctctgtgtgtcagtctctgtgaaggaggcgtgtcctctgtgtgtcagtctcagtgaaggaggtgtggacctctgtgtcagtctcactgaaggaggcgtggcctctgtgtgtgtcagtctcagggaaggaggtgtggcctctgtgtgtcagtctcagtgaaggaggtgtggcctctgtggcagtctcagtgaaggaggcgtggtctctgtgtgtgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU324966 True 1155 lncRNA 0.50 2 23664861 23666329

Neighbor

gene id symbol gene type direction distance location
strbp strbp,LOC107744073,LOC107686417 coding downstream 157359 23394533 ~ 23507502 (-)
morn5 morn5 coding downstream 501395 23150003 ~ 23163466 (-)
mrrf mrrf coding downstream 560203 23085312 ~ 23104658 (-)
LOC113544094 anxa3 coding downstream 594813 23061736 ~ 23070048 (-)
anxa3b anxa3 coding downstream 608068 23047904 ~ 23056793 (-)
dbh dbh coding upstream 57398 23723727 ~ 23745533 (-)
exd3 exd3 coding upstream 207364 23873693 ~ 23935370 (-)
ak3 ak3,LOC107658667,LOC107685112,LOC107744244,LOC107713310 coding upstream 278046 23944375 ~ 23956050 (-)
ptbp3 ptbp3,LOC107658670,LOC107744247 coding upstream 374702 24041031 ~ 24095321 (-)
LOC113543977 NA coding upstream 451694 24118023 ~ 24193873 (-)
G274149 NA non-coding downstream 23578 23641061 ~ 23641283 (-)
G274137 NA non-coding downstream 44157 23620413 ~ 23620704 (-)
G274058 NA non-coding downstream 271728 23392586 ~ 23393133 (-)
G274022 NA non-coding downstream 387011 23274839 ~ 23277850 (-)
G274031 LOC108276736 non-coding downstream 393357 23271002 ~ 23271504 (-)
G274290 NA non-coding upstream 54655 23720984 ~ 23747180 (-)
LOC113544044 NA non-coding upstream 112524 23778853 ~ 23780770 (-)
G274339 NA non-coding upstream 123129 23789458 ~ 23790144 (-)
G274355 NA non-coding upstream 157764 23824093 ~ 23829759 (-)
G274318 ambp non-coding upstream 168726 23835055 ~ 23845476 (-)
LOC113544130 rusc2 other downstream 2457691 21189969 ~ 21207170 (-)
drg1 drg1,LOC107744129,LOC107567440,LOC107713382,LOC107555524 other downstream 2883787 20772560 ~ 20781074 (-)
pmaip1 NA other downstream 3550402 20111448 ~ 20114459 (-)
G272551 NA other downstream 3583950 20079415 ~ 20080911 (-)
ppp3ccb ppp3ccb,LOC103046193,LOC108440561,LOC107720725,LOC107678020,LOC107553709,LOC107586120,LOC107705087 other downstream 4332671 19246977 ~ 19332190 (-)
G274342 slc27a4 other upstream 132030 23798359 ~ 23802284 (-)
nrarpa nrarp,nrarpa other upstream 192976 23859305 ~ 23863268 (-)
inip inip,LOC107571239,LOC107658659,LOC107558675 other upstream 585219 24251548 ~ 24253312 (-)
LOC113544170 plac8 other upstream 631147 24297476 ~ 24301032 (-)

Expression


Co-expression Network