G274342 (slc27a4)


Basic Information

Item Value
gene id G274342
gene name slc27a4
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 23798359 ~ 23802284 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU325027
CAGATGTGTAAATGTAGAAGAGACGATCTAACAGGGaaaatcagatcagatcagaattCAGAACCATGTGGACCTTTAACACGCCCAGACAAGCTCTCTacatgtgattggctggtgtaCCGGTGAAGCCGCGCTGTGGGTGGCTGGGCTtgtgtgtgggcgtggcctggaGGAGCGGCTCCAAACACTCGGTTCCTTCAGGTACTCGTTCAGGATCCCAGTCACCAGAACAGAAGAGCTTTACGGTTTTCCCCATGGAGCTGTGCACCTCACACatcgctTGGTCAGCTCGCTGCCGAACACCACGGCTTTGGCGTTGGAGATGTTGACGCAGTGCACCAGGGCCTCCAGACGCAGGTTGAAGTTGATGAGCGCCGCCTCGATGCCGATCTTGGCCATGCCCAGCCACAGACCCACGTACTGCGAGCGGTTCTCCATGAACAGAGCCACCACGTCGCCCTCCCTGAAGCCGCGCTCGTGCAGCAGGTTGGCCACGCGGTTCGAGTACTCGTCCAGCTGCCTGAAGCTCCACCGCTCGCCCGTGCCCTCGAAGATCAGCGCCGTCTTGTCGCCGTACTTCCGTACCGTCTGGGCGAAGATCTTGGGGATGGTGTTAGACTCGCGCAGGTGTCGCTTCACGTTCAGCTTCACTTTCAGCAGCACCACGGCCG

Function

symbol description
slc27a4 Predicted to enable long-chain fatty acid transporter activity and long-chain fatty acid-CoA ligase activity. Predicted to be involved in lipid transport; response to nutrient; and very long-chain fatty acid catabolic process. Predicted to act upstream of or within fatty acid transport. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane; microvillus; and plasma membrane. Is expressed in intestinal bulb. Orthologous to human SLC27A4 (solute carrier family 27 member 4).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU325027 True 671 TUCP 0.59 2 23798359 23802284

Neighbor

gene id symbol gene type direction distance location
dbh dbh coding downstream 52826 23723727 ~ 23745533 (-)
strbp strbp,LOC107744073,LOC107686417 coding downstream 290857 23394533 ~ 23507502 (-)
morn5 morn5 coding downstream 634893 23150003 ~ 23163466 (-)
mrrf mrrf coding downstream 693701 23085312 ~ 23104658 (-)
LOC113544094 anxa3 coding downstream 728311 23061736 ~ 23070048 (-)
exd3 exd3 coding upstream 71409 23873693 ~ 23935370 (-)
ak3 ak3,LOC107658667,LOC107685112,LOC107744244,LOC107713310 coding upstream 142091 23944375 ~ 23956050 (-)
ptbp3 ptbp3,LOC107658670,LOC107744247 coding upstream 238747 24041031 ~ 24095321 (-)
LOC113543977 NA coding upstream 315739 24118023 ~ 24193873 (-)
LOC117599328 LOC107690397,LOC107716059,LOC107572820 coding upstream 363093 24165377 ~ 24171214 (-)
G274339 NA non-coding downstream 8215 23789458 ~ 23790144 (-)
LOC113544044 NA non-coding downstream 17589 23778853 ~ 23780770 (-)
G274290 NA non-coding downstream 51179 23720984 ~ 23747180 (-)
G274294 NA non-coding downstream 132030 23664861 ~ 23666329 (-)
G274149 NA non-coding downstream 157076 23641061 ~ 23641283 (-)
G274355 NA non-coding upstream 21809 23824093 ~ 23829759 (-)
G274318 ambp non-coding upstream 32771 23835055 ~ 23845476 (-)
G274321 NA non-coding upstream 37704 23839988 ~ 23840458 (-)
G274361 NA non-coding upstream 46076 23848360 ~ 23848564 (-)
G274370 NA non-coding upstream 65958 23868242 ~ 23868457 (-)
LOC113544130 rusc2 other downstream 2591189 21189969 ~ 21207170 (-)
drg1 drg1,LOC107744129,LOC107567440,LOC107713382,LOC107555524 other downstream 3017285 20772560 ~ 20781074 (-)
pmaip1 NA other downstream 3683900 20111448 ~ 20114459 (-)
G272551 NA other downstream 3717448 20079415 ~ 20080911 (-)
ppp3ccb ppp3ccb,LOC103046193,LOC108440561,LOC107720725,LOC107678020,LOC107553709,LOC107586120,LOC107705087 other downstream 4466169 19246977 ~ 19332190 (-)
nrarpa nrarp,nrarpa other upstream 57021 23859305 ~ 23863268 (-)
inip inip,LOC107571239,LOC107658659,LOC107558675 other upstream 449264 24251548 ~ 24253312 (-)
LOC113544170 plac8 other upstream 495192 24297476 ~ 24301032 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G420541 NA non-coding CI01000304 null 5219582 ~ 5219951 (+)