G274383


Basic Information

Item Value
gene id G274383
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 23939196 ~ 23942218 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU325075
CAGAATGTTACAATCAGATATCACGGTCTGGGACACGCCCCGCTGCTGCAGACGCCGAGAGAACGTCTGCGCTCCTCTTTTATCTCTCGTTTTCCTGCATGATCTCCTGTTTGCATAAAAAGCGTTTGAAACTGTTCATGCTGTTCCTCAGAGATCCAGGATCTGCAGCGCTGATGGATGACGGTGTGAAACAGAGCCGTACATCGACGCAGGGATTCTGCAcagccaaacaaaacaaaacaaaaaacagtcgCTAAAACTGACATGAAGTTCGCCAACGATTAACTCTACGTTCACACTGACGGCGAGAATGCGATCGTTCGATTTCTACGCACTACGTGTCACACGGAGCTGCGATTTCAGTGACAAGAAACGTCTGAATTTTTAGAAATTTGCTATGATTCTGTAAAGAAGTAACAAATCCAAAGAAACGCTTTTCTCACTGTTTAgtgcattatttcatttttgtttaactagctagctagctttagaaCTGATATATAGCTACTAATGTTTCTCATCAGAACTGGgcggaaaaaaaaacctaaacaggccacgcccacaagtgacaaACTACAGCATATGTGAAAAATCAGGAACAAATAGTAAAGAGTAAAACTACATGTTcttaattttgtgtttataagTTACAACGTACAAAACGCTCCACGCGTTCACGTTTACGCGCTACGCATTTTCTCAGCCGCTGAATCGAGTTTTTGCGGATTTTGCGTGACGTATTCGCACTGGGTCCGGACTTTTCGGACACCTTGTACAAGCGACTCCTCACCAGCTAGCGTGAAAATCGAATCAAATGTGATTTACGCTACttctttccaagctttatttttcttcctaattttCTTCGTTAATGAGACGTCGTATATGAGGATAAGatgaaaacataatgaagtTGTAAgattttcttgcattttttttacaggaacTAATCGCacgtaggaactaaagttgtgagctTACGTAACGTTGGACCGCAAGTGCGTATGAGGAATCGTTACGAGTCGAGGGTTTGGATTTGTCTCTTCTTTAGAGCGACATAATTctttatttgcataaaattgagaAACACCGAATTCAAAATGTAGCTGAAATCGCAGCTCAGTGTTGCACAGCTGCGTAGAACATGAACGTCGTTGGCCATTTTGTTGCTCGCTAGCGTGAACGCAGGATGGCGCAGCGTTCAGTACAAACAAGTTTTATCCTGGTGgtttagatttattttagttttatccTGGTGGTTAAAATTTGttaacattttgtgaaattcGTTCAAACCTCTAACGCAAAcggaaatatgaaatatgaaatctgCGAGACATCGATCTGGACTTTACACTCAACCTTTTATTCTTTAACCCGGCTGGTGTGTAACACTGAGGAGAAAGCGGATAAAAGCGCACGTGACACGTTGCATAGGTCTCAAATCTACACGCTGTGAAGTGCACACGAGCTAGGAAGTGTTCTTGCTTCATGCTGTAAGGCTGTTTAGAGCGACTTTACTCAGcacaagtgagtgtgtgtgtgtgcgtgtgtgttttggctTAATAAACGCTGTGTGAACACTGTAAGCTAATACCACAAGACAGGAGAGAGCTCAGATCTGTACCACGTCCCACCCTGACGTTCAGGCTATGATTAGCTCTCGGCTTTATTTCAATGATATCTGATCTCCGCCGGATCGGACTGGATGTGGCTCGGAAATTTCAGCAGCATAAACGTTTGCactacagagcaaaaaaaaaaaattattaatgatgtttatttgccctgtagtgcactttatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttttaaagaatgagaaagaaatggttaatgatggttaaaaaaatctttttaaatttgtcttttttttttttaacataaaatgcaCTGCATGGTGAATAAGCACCATTAATTAATTTCCTCAATATcacattttatgttaaaaaaatgaaatgaaaaaaaaagagaaaaaaaggaaattgttTGAgagtgatgtttaaaaaaaaaaaaaagagtcaaaaataataatttccctttttttccccttttttaatttttttttttttacataaaatgcgCTACTTGGTGAATAAGCACCATTAATTACTTTCCTGTGACGTGCGTTTTATGTTTgaaaaaatttaagaaaagaaatcatTTGAGACGGTaagaaaaagtcaaaatgatttGGAAAACGTTTGAAACGGAcagttaaaaaagtaaaaatgatgaAGATcccttttttaaagttattttttaaacataaaTAAAGGGAAAGAAGGGAAACCATGTGAGAAGGTTAAAGAAATTTCACGTTAAAGACGTTTTACAGAATGATTTCACGTCCCTAAAGAAGCTCTgacagaaaaaagcaaaacaaaacccctgtaaaaaatagtgaaaacaTAAATCAGTGTTTCTGTCACGCCTCGAACTCACGACAGAAACGTAACAAAATGTGCACAAAAATACCTCGTCCTATCTTTGCTCTATTTTTATATACTATCTTCTCAATCAGATATAAAGTGCAGCACACGTTCACACGTGgatccaaaaaacaaacaaacaaacaaacaaacaaacaaacaaaaagtctCTGATGGCAGCCGTTctgttcctcctcctcttcctcctcttcctctcatcttctcctccttcttctcttcttcctctcctccagGATGAAGGTCGTGTTCACTCGTCTGATCTTCACGCGATTTTCACACAAACTTCAACATCATTGTCCTGAACACCAGCGAGAgacggcgtgtgtgtgtgtgtgtgtgtgttagaacgTCTCCATCATCCTCTGATCCTCTGTTTCTGTGTCCTCGTCTTTAGAGCCCCGCCCAGGATGTGAACACAGCCCCGCCTCCAAACATCGCTTTATATGATACTCcgccacc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU325075 True 2939 lncRNA 0.39 3 23939196 23942218

Neighbor

gene id symbol gene type direction distance location
exd3 exd3 coding downstream 3826 23873693 ~ 23935370 (-)
dbh dbh coding downstream 193663 23723727 ~ 23745533 (-)
strbp strbp,LOC107744073,LOC107686417 coding downstream 431694 23394533 ~ 23507502 (-)
morn5 morn5 coding downstream 775730 23150003 ~ 23163466 (-)
mrrf mrrf coding downstream 834538 23085312 ~ 23104658 (-)
ak3 ak3,LOC107658667,LOC107685112,LOC107744244,LOC107713310 coding upstream 2157 23944375 ~ 23956050 (-)
ptbp3 ptbp3,LOC107658670,LOC107744247 coding upstream 98813 24041031 ~ 24095321 (-)
LOC113543977 NA coding upstream 175805 24118023 ~ 24193873 (-)
LOC117599328 LOC107690397,LOC107716059,LOC107572820 coding upstream 223159 24165377 ~ 24171214 (-)
lin54 lin54,LOC107744261 coding upstream 317490 24259708 ~ 24274253 (-)
G274370 NA non-coding downstream 70739 23868242 ~ 23868457 (-)
G274361 NA non-coding downstream 90632 23848360 ~ 23848564 (-)
G274318 ambp non-coding downstream 93720 23835055 ~ 23845476 (-)
G274321 NA non-coding downstream 98738 23839988 ~ 23840458 (-)
G274355 NA non-coding downstream 109437 23824093 ~ 23829759 (-)
G274380 NA non-coding upstream 1194 23943412 ~ 24020906 (-)
G274386 NA non-coding upstream 39954 23982172 ~ 24015670 (-)
G274400 NA non-coding upstream 53745 23995963 ~ 24012459 (-)
LOC113544148 NA non-coding upstream 79569 24021787 ~ 24030494 (-)
G274379 NA non-coding upstream 92091 24034309 ~ 24038497 (-)
nrarpa nrarp,nrarpa other downstream 75928 23859305 ~ 23863268 (-)
G274342 slc27a4 other downstream 136912 23798359 ~ 23802284 (-)
LOC113544130 rusc2 other downstream 2732026 21189969 ~ 21207170 (-)
drg1 drg1,LOC107744129,LOC107567440,LOC107713382,LOC107555524 other downstream 3158122 20772560 ~ 20781074 (-)
pmaip1 NA other downstream 3824737 20111448 ~ 20114459 (-)
inip inip,LOC107571239,LOC107658659,LOC107558675 other upstream 309330 24251548 ~ 24253312 (-)
LOC113544170 plac8 other upstream 355258 24297476 ~ 24301032 (-)

Expression


Co-expression Network