G274431


Basic Information

Item Value
gene id G274431
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 24124736 ~ 24125213 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU325129
CTCTGTTTCACTGTCTTCCGGCTTTCTTTCTTCAGCAGCAGctgcagcttcagcttcaggttCAGCCTCAGGTTCAGCGTCAACTacagcttcagcttcaggttCAGCTTCAGGTTCAGCCTCCACTACagcttcaggttcaggttcagcttcagcttcagcttcagcttcaacCTCAGCTTCAGGTTCAGCGTCAGCTTCAGCCTCCACTACAGCTTCAGGTTCAGCTTCAACCTCAGGTTCAGCGTCAGCTTCAGCCTCCACTACAGCTTCAGGTTCAGCATCAACtacagcttcagcttcagcttcaggttcaggttcagctTCAGCCTCCACTACAGCTTCAGGTTCagcttcaggttcaggttcaggttcagctTCAGCCTCCACTACAGCTTCAGGTTCAGCTTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU325129 True 412 lncRNA 0.52 2 24124736 24125213

Neighbor

gene id symbol gene type direction distance location
ugcg ugcg,LOC107571241,LOC107558686,LOC107713309,LOC107658668 coding upstream 113686 23971438 ~ 24011050 (+)
ambp ambp coding upstream 279341 23835167 ~ 23845395 (+)
ptgdsa lcn2 coding upstream 293211 23815676 ~ 23831525 (+)
slc27a4 slc27a4,LOC107658662,LOC107744240,LOC107685116,LOC107713315 coding upstream 314907 23789432 ~ 23809829 (+)
swi5 swi5 coding upstream 337953 23781356 ~ 23786783 (+)
LOC113544070 kiaa1958,LOC107683261,LOC106568575 coding downstream 108547 24233760 ~ 24252068 (+)
cops4 cops4,csn4,LOC107685106,LOC107558694 coding downstream 150869 24276082 ~ 24296725 (+)
cwc27 cwc27,LOC107744252,LOC107713303 coding downstream 184818 24310031 ~ 24359123 (+)
ppwd1 ppwd1 coding downstream 331823 24457036 ~ 24465100 (+)
nln nln,LOC107743138 coding downstream 378650 24503863 ~ 24525223 (+)
G274289 NA non-coding upstream 13998 24107648 ~ 24110738 (+)
G274239 NA non-coding upstream 178229 23945616 ~ 23946507 (+)
G274193 NA non-coding upstream 255539 23868854 ~ 23869197 (+)
G274192 NA non-coding upstream 264033 23859824 ~ 23860703 (+)
G274186 NA non-coding upstream 272518 23851997 ~ 23852218 (+)
G274457 lin54 non-coding downstream 132694 24257907 ~ 24261576 (+)
G274583 NA non-coding downstream 277810 24403023 ~ 24491201 (+)
G274624 NA non-coding downstream 366202 24491415 ~ 24491856 (+)
G274639 NA non-coding downstream 411917 24537130 ~ 24537736 (+)
G274646 NA non-coding downstream 457768 24582981 ~ 24583278 (+)
hsdl2 hsdl2,LOC107558693,LOC107744249,LOC107658673,LOC107685110 other upstream 11883 24103073 ~ 24112853 (+)
cdc37l1 LOC108276758,LOC108433523 other upstream 184604 23937978 ~ 23940132 (+)
LOC113543986 rabgap1,LOC107686418,LOC107744072 other upstream 738629 23281561 ~ 23386107 (+)
rc3h2 rc3h2,LOC108276736,LOC107595546,LOC106561687 other upstream 850083 23244560 ~ 23274653 (+)
lhx6 lhx6,LOC107597616,LOC107685129 other upstream 979169 23049812 ~ 23145567 (+)
LOC117599389 NA other downstream 100941 24226154 ~ 24232819 (+)
trappc13 trappc13,LOC107667267,LOC107726564 other downstream 355386 24480599 ~ 24498642 (+)
erbin erbin,erbb2ip other downstream 404765 24529978 ~ 24639642 (+)
zfand5b zfand5,LOC108277070,LOC108428885,LOC107742939,LOC107726558,LOC107705050,LOC107667265 other downstream 474649 24599862 ~ 24658701 (+)

Expression


Co-expression Network