LOC117599389


Basic Information

Item Value
gene id LOC117599389
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 24226154 ~ 24232819 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU325153
gaagctgaagctgaacctgcagctgctgctgaagaaagaaagcaggaagACAGTGAAACAGAGAACAGCACATCTCTGGTAAACACCAACGAGACGGACGAGCCTGCTGAAAGCACCAGGAAAGGAGacgagaaaaagaaaaggaccaGGAGAGGAACACGAGGCAGAGGCAGAAAGATCAATTACAGAAAGTTCCAGGACAACAAAGcagAAACAGAGAAGCTGAAAGAGGTGGATGATGGAGCGGAGGCTGAAGCCATCAGTGAACTGATGAACGTCCTCCTGGATGAGACAG
>TU325154
GGGGAAATGATCGACCTGCCTCTGGGGATGCTGAAGGAGGTGGATGATGGGGCGGAGGCTGAAGCCATCAGCCAGCTCCAGAACGTCCTCCTGGATCAGGCAGGGGAAACTTCTGGCCAGTCTCTGgGGATGCTGAAGGAGGTGGATGATGGGGCGGAGGCTGAAGCCATCAACCAGCTCCAGAACGTCCTCCTGGATCAGGCAGGGGAAACTTCTGGCCAGTCTCTGGG
>XM_034312840.1
ATGAGACAGGAGGAATCCAATGGCCAGTCTCTGGcAGGAGAAAGTGGGGAGATCGTGATGAGTGCCGACGCTGAAGCTGAGGCTGAAGCCTTTAATGATTTCCTGACCGTCCTCCTGGAGGAGATAAGCGACGAGATCAACCTGCCTCTGGgGATGCTGAAAGAGGTGGATGATGGGGCGGAGGCTGAAGCCATCAACCAGCTCCTGAACGTCCTCCTGGATCAGTCAGGGGAAATGATCGACCTGCCTCTGGgGATGCTGAAGGAGGTGGATGATGGGGCGGAGGCTGAAGCCATCAGCCAGCTCCAGAACGTCCTCCTGGATCAGGCAGGGGAAACTTCTGGCCACTCTCTGGGGATGCTGAAGGAGGTGGATGATGGGGCGGAGGCTGAAGCCATCAGCCAGCTCCAGAACGTCCTCCTGGATCAGGCAGGGGAAACTTCTGGCCAGTCTCTGgGGATGCTGAAGGAGGTGGATGATGGGGCGGAGGCTGAAGCCATCAACCAGCTCCAGAACGTCCTCCTGGATCAGGCAGGGGAAACTTCTGGCCAGTCTCTGGGGATGCTGAAGGAGGTGGATGATGGGGCGGAGGCTGAAGCCATCAGCCAGCTCCAGAACGTCCTCCTGGATCAGTCAGGGGAAACTTCTGGCCAGTCTCTGGgGATGCTGAAGGAGGTGGATGATGGGGCGGAGGCTGAAGCCATCAGCCAGCTCCAGAAAGTCCTCCTGGATCAGGCAGGGGAAACATCTGGCCAGTCTCTGGGGATGCTGAAGGAGGTGGATGATGGGGCGGAGGCTGAAGCCATCATCCAGCTCCAGAATGTCCTCCTGGATCAGGCAGGGGAAACATCTGGCCAGTCTCTGGagatGCTGAAGGAGGTGGATGATGGGGCGGAGGCTGAAGCCATCAGCCAGCTCCAGAACGTTCTCCTAGTTCAGGCAGGGGAAACTTCTGGCCAGTCTCTGGcAGGAGAAAGTGGGGAGATCGTGATGAGTGCCGACGCTGAAGCTGAGGCTGAAGCCTTTAATGATTTCCTGACCGTCCTCCTGGAGGAGATAAGCGACGAGATCAACCTGCCTCTGGgagacATTGAGGCTGAAGCTGAAGGTGAAACTAAAGCTGAAGCTGAAGGTCAAGCTGAAGTTGAGGCTGAAGTTGAGGCAGAAGGTGAAGCTGAAGTTGAGGCAGAAGATGAAGTTGAAGCTGAAATTGAGGCTGAAAGTGAAGCTGAAGGTGAAACtaaagctgaagctgaagttgAGGCTGAAGATAAAGGTGAAGCTGAAGGAGTTGTTGAAGAAGGAAAGCTGGACGACACTAAAACAGAGAACAGCACATCTCTGGAGAGCAATAATACAGAGAAGCCTGAAAACACCGGGAatggaaatgagaaaaagaaaaggagcagGAGAGGAACACGAGGCAAAGGAAGGAAGATCAATTACAGAAAGTTCCAGGACAATAAAGcagGACGATCTGCAGCTGAGGCCGTAGAAAGACCAGCAGAAGATGCAGAAACAGAGAACAGCACACCTCTGGCAGACAAACCCATGGTGAAGGCGGATGAAGAATCTGAGCCTAAAGAGGAAATCCAACTCCCTGAGACGGAGACCGTTAACGAGCAGCTCCTGAATGAAGTAAAGGCAAAGAAGAAGGTCAGGAGAGGAACACgaggaagagggagaaaaaTCAACTACAAGAAAGTTGAGGACAAAGAAGCTGAACAGAATGGAGGGAGGAAAGAGCTGACTGACGCCAAAGCATCAAGAGACCAGCGTGAAcgtcagacagaaagaaagccgcagacacacacacgtgtgtggaCACGCCGTGACCGAGCCTGTGAGTCAGGGTGGAGAGGACCTGCTCACTGCGaccagagagacaggagagtcCCGAGAAGATCAGCTCAAGAGACGCCATCACATGCTGGAGCCTGatcaattaaacacacacacacacacacaccaagcccCCATCCTCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU325153 False 295 lncRNA 0.49 3 24226154 24226807
TU325154 False 230 TUCP 0.60 3 24227381 24228678
XM_034312840.1 True 1985 mRNA 0.54 17 24226799 24232819

Neighbor

gene id symbol gene type direction distance location
ugcg ugcg,LOC107571241,LOC107558686,LOC107713309,LOC107658668 coding upstream 215104 23971438 ~ 24011050 (+)
ambp ambp coding upstream 380759 23835167 ~ 23845395 (+)
ptgdsa lcn2 coding upstream 394629 23815676 ~ 23831525 (+)
slc27a4 slc27a4,LOC107658662,LOC107744240,LOC107685116,LOC107713315 coding upstream 416325 23789432 ~ 23809829 (+)
swi5 swi5 coding upstream 439371 23781356 ~ 23786783 (+)
LOC113544070 kiaa1958,LOC107683261,LOC106568575 coding downstream 941 24233760 ~ 24252068 (+)
cops4 cops4,csn4,LOC107685106,LOC107558694 coding downstream 43263 24276082 ~ 24296725 (+)
cwc27 cwc27,LOC107744252,LOC107713303 coding downstream 77212 24310031 ~ 24359123 (+)
ppwd1 ppwd1 coding downstream 224217 24457036 ~ 24465100 (+)
nln nln,LOC107743138 coding downstream 271044 24503863 ~ 24525223 (+)
G274431 NA non-coding upstream 100941 24124736 ~ 24125213 (+)
G274289 NA non-coding upstream 115416 24107648 ~ 24110738 (+)
G274239 NA non-coding upstream 279647 23945616 ~ 23946507 (+)
G274193 NA non-coding upstream 356957 23868854 ~ 23869197 (+)
G274192 NA non-coding upstream 365451 23859824 ~ 23860703 (+)
G274457 lin54 non-coding downstream 25088 24257907 ~ 24261576 (+)
G274583 NA non-coding downstream 170204 24403023 ~ 24491201 (+)
G274624 NA non-coding downstream 258596 24491415 ~ 24491856 (+)
G274639 NA non-coding downstream 304311 24537130 ~ 24537736 (+)
G274646 NA non-coding downstream 350162 24582981 ~ 24583278 (+)
hsdl2 hsdl2,LOC107558693,LOC107744249,LOC107658673,LOC107685110 other upstream 113301 24103073 ~ 24112853 (+)
cdc37l1 LOC108276758,LOC108433523 other upstream 286022 23937978 ~ 23940132 (+)
LOC113543986 rabgap1,LOC107686418,LOC107744072 other upstream 840047 23281561 ~ 23386107 (+)
rc3h2 rc3h2,LOC108276736,LOC107595546,LOC106561687 other upstream 951501 23244560 ~ 23274653 (+)
lhx6 lhx6,LOC107597616,LOC107685129 other upstream 1080587 23049812 ~ 23145567 (+)
trappc13 trappc13,LOC107667267,LOC107726564 other downstream 247780 24480599 ~ 24498642 (+)
erbin erbin,erbb2ip other downstream 297159 24529978 ~ 24639642 (+)
zfand5b zfand5,LOC108277070,LOC108428885,LOC107742939,LOC107726558,LOC107705050,LOC107667265 other downstream 367043 24599862 ~ 24658701 (+)

Expression


Co-expression Network