G274457 (lin54)


Basic Information

Item Value
gene id G274457
gene name lin54
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 24257907 ~ 24261576 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU325164
TAAAGAGATGAACAGGGTTTAGTAATAATGCTTTAACCTTCCTTCACTTCAGCAGGAAATCAATTGTACAAACCAGACATGAGCGCGAGACTCTGACTCCACGTCCTCTCGGATTTCTggaattagtaaataaatactgaTGCATTATGAAGAGGCTACAGTAAAGGCTACGTACTGTATACAAGTCATGATTATTGAGCTGAGGTTATTAGCGGTAAATAAACAGCAAGACGAGACGGCAAAACAACGGCACAGAATGAAAGCCTTGttgggaaagagagaaaacgaaaaaaaaacaaatggaaaaaagcacatatgattgTGAGTTTAAAATGAGAAGGCTAACAAGCATAAAAATGACTCTAAAATCAATTCCCCTCTACACAAGTgacctgtacaacacacacacacacacacacacacgccagagTGATGCAGATGAAGCTGGCAGCCATTGCAGTTCTCATCTTATAAAGTTCGTCTCTTTGTGTCCACTttagctccacacacacacacacacacacacacacacacacacacacacacacacacacacacgcttgtgTACGATCAGCTAACAGAAGTCTCGCTCTGTACAAAAGCACGAGCTCCGACCCGGAAATCCCGCTGACAGGCCAGAGTGTGTTCCAGGATGTCTGATCCAGGATCAGTTCGCAGAAGCGCAGCGCAGCTCTAGCAGTTGATGGAGCAGTCCGTCTTGGCTTTAGCAGCAGAGCTGATGATTCTGCGCAGACAGTGACCAAACTCCTCCAGGATCAGTCTCTCTGCCACCGTCTGAGGCTGGTTATAACGCTCCGCCTTCCTCGCCTGCTCCAGGAGACAGTCACACGTCGCCTCGGCAACCTCCTTCGTCACGAACGTGTACGGCAACCCCCGCTGCTGATGGCCGGTGTGGTTCTGGTCAGCAGGTCTGAGATCTGAGAGGACAGTTTGGTTTTAGCTGCAGTCTGCTGCTGCACTCGCACCTCCGCCGCATCGGCCAAGTGCATCAGAGTCTTCCTCTCAGGACTCTCCTCGAAGTTCTTACAGCCCACACACTTACAGATCGACGAGCACATGATCTTCGCCTgggaacacacacgcacacgcacgcacacgcacacacacgc
>TU325166
aaaacacacacacacacacacacacacacactcacactctcacacacacacacacacacacactcacacacacacacacacacacgcagtagAAGCAGTGAGTGCAGTGAGTCGTACTTCCCCCCGCTGCTGATGGCCGGTGTGGTTCTGGTCAGCAGGTCTGAGATCTGAGAGGACAGTTTGGTTTTAGCTGCAGTCTGCTGCTGCACTCGCACCTCCGCCGCATCGGCCAAGTGCATCAGAGTCTTCCTCTCAGGACTCTCCTCGAAGTTCTTACAGCCCACACACTTACAGATCGACGAGCACATGATCTTCGCCTgggaacacacacgcacgcacgcacacacacgc

Function

symbol description
lin54 Predicted to enable DNA binding activity and metal ion binding activity. Predicted to be involved in regulation of transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human LIN54 (lin-54 DREAM MuvB core complex component).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU325164 True 1130 lncRNA 0.49 2 24259709 24261542
TU325166 False 351 lncRNA 0.55 4 24257907 24261576

Neighbor

gene id symbol gene type direction distance location
LOC113544070 kiaa1958,LOC107683261,LOC106568575 coding upstream 5839 24233760 ~ 24252068 (+)
ugcg ugcg,LOC107571241,LOC107558686,LOC107713309,LOC107658668 coding upstream 246857 23971438 ~ 24011050 (+)
ambp ambp coding upstream 412512 23835167 ~ 23845395 (+)
ptgdsa lcn2 coding upstream 426382 23815676 ~ 23831525 (+)
slc27a4 slc27a4,LOC107658662,LOC107744240,LOC107685116,LOC107713315 coding upstream 448078 23789432 ~ 23809829 (+)
cops4 cops4,csn4,LOC107685106,LOC107558694 coding downstream 14506 24276082 ~ 24296725 (+)
cwc27 cwc27,LOC107744252,LOC107713303 coding downstream 48455 24310031 ~ 24359123 (+)
ppwd1 ppwd1 coding downstream 195460 24457036 ~ 24465100 (+)
nln nln,LOC107743138 coding downstream 242287 24503863 ~ 24525223 (+)
apba1b LOC108276879 coding downstream 457153 24718729 ~ 24733547 (+)
G274431 NA non-coding upstream 132694 24124736 ~ 24125213 (+)
G274289 NA non-coding upstream 147169 24107648 ~ 24110738 (+)
G274239 NA non-coding upstream 311400 23945616 ~ 23946507 (+)
G274193 NA non-coding upstream 388710 23868854 ~ 23869197 (+)
G274192 NA non-coding upstream 397204 23859824 ~ 23860703 (+)
G274583 NA non-coding downstream 141447 24403023 ~ 24491201 (+)
G274624 NA non-coding downstream 229839 24491415 ~ 24491856 (+)
G274639 NA non-coding downstream 275554 24537130 ~ 24537736 (+)
G274646 NA non-coding downstream 321405 24582981 ~ 24583278 (+)
G274653 NA non-coding downstream 390174 24651750 ~ 24652197 (+)
LOC117599389 NA other upstream 25088 24226154 ~ 24232819 (+)
hsdl2 hsdl2,LOC107558693,LOC107744249,LOC107658673,LOC107685110 other upstream 145054 24103073 ~ 24112853 (+)
cdc37l1 LOC108276758,LOC108433523 other upstream 317775 23937978 ~ 23940132 (+)
LOC113543986 rabgap1,LOC107686418,LOC107744072 other upstream 871800 23281561 ~ 23386107 (+)
rc3h2 rc3h2,LOC108276736,LOC107595546,LOC106561687 other upstream 983254 23244560 ~ 23274653 (+)
trappc13 trappc13,LOC107667267,LOC107726564 other downstream 219023 24480599 ~ 24498642 (+)
erbin erbin,erbb2ip other downstream 268402 24529978 ~ 24639642 (+)
zfand5b zfand5,LOC108277070,LOC108428885,LOC107742939,LOC107726558,LOC107705050,LOC107667265 other downstream 338286 24599862 ~ 24658701 (+)

Expression


Co-expression Network