LOC113544170 (plac8)


Basic Information

Item Value
gene id LOC113544170
gene name plac8
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 24297476 ~ 24301032 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU325248
GGAGTTTGTTTGCTTGTAAAAATTTCAGCATGTGACTATAAAAGAGCTGTAAAAGCCGTGAAACTTAAACATCGCTGCTTATTCAGGTGCATCTTTAACCAGacAGTAGAAGATGGAGGTGACGACTCAGCCTGGACCGTTCGCTCCCTCTGACTTCCAGACCGGACTGTTTGAGTGCTGTGACGACTGCGGTACCTgtatGTATGGGTGCTGCTGTCTCGTCTGTCTGGGCTGTACCATCGCCGACAATATGGGGGAGTGCTGTTTGTGTGGACTGGGAATGCCCATCCGTAGTGTGTACAGAACCAAATACAACATCAAGGGTTCGATGTGTAAAGACTTTATAATCACTGATTTCTGCTTACCCTGCGCAACCTGCCAGCTGAAGAGAGACATCGACAGGAGGAAGCAGCAGGGGATCTTCTGAATCTCATGAGAGTCTTTACACCGCTGAAGATCAAACCAAGCTGCgattttcctcattttgtgcttaaagtgtaaatgtgtgaaagcTGTAAGGAAcaattataatgattttatacct
>XM_026942838.2
TGTGTAATTCTGCTGCTGGTGGACTCTTGGAGTTTGTTTGCTTGTAAAAATTTCAGCATGTGACTATAAAAGAGCTGTAAAAGCCGTGAAACTTAAACATCGCTGCTTATTCAGGTGCATCTTTAACCAGacAGTAGAAGATGGAGGTGACGACTCAGCCTGGACCGTTCGCTCCCTCTGACTTCCAGACCGGACTGTTTGAGTGCTGTGACGACTGCGGTACCTgtatGTATGGGTGCTGCTGTCTCGTCTGTCTGGGCTGTACCATCGCCGACAATATGGGGGAGTGCTGTTTGTGTGGACTGGGAATGCCCATCCGTAGTGTGTACAGAACCAAATACAACATCAAGGGTTCGATGTGTAAAGACTTTATAATCACTGATTTCTGCTTACCCTGCGCAACCTGCCAGCTGAAGAGAGACATCGACAGGAGGAAGCAGCAGGGGATCTTCTGAATCTCATGAGAGTCTTTACACCGCTGAAGATCAAACCAAGCTGCgattttcctcattttgtgcttaaagtgtaaatgtgtgaaagcTGTAAGGAAcaattataatgattttataccttcaaa
>XM_026942839.2
tgtgtgtttatcagacAGTAGAAGATGGAGGTGACGACTCAGCCTGGACCGTTCGCTCCCTCTGACTTCCAGACCGGACTGTTTGAGTGCTGTGACGACTGCGGTACCTgtatGTATGGGTGCTGCTGTCTCGTCTGTCTGGGCTGTACCATCGCCGACAATATGGGGGAGTGCTGTTTGTGTGGACTGGGAATGCCCATCCGTAGTGTGTACAGAACCAAATACAACATCAAGGGTTCGATGTGTAAAGACTTTATAATCACTGATTTCTGCTTACCCTGCGCAACCTGCCAGCTGAAGAGAGACATCGACAGGAGGAAGCAGCAGGGGATCTTCTGAATCTCATGAGAGTCTTTACACCGCTGAAGATCAAACCAAGCTGCgattttcctcattttgtgcttaaagtgtaaatgtgtgaaagcTGTAAGGAAcaattataatgattttataccttcaaa

Function

symbol description
plac8 Predicted to enable chromatin binding activity. Predicted to be involved in positive regulation of cold-induced thermogenesis and positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including brown fat cell differentiation; defense response to bacterium; and response to cold. Predicted to be located in azurophil granule lumen and extracellular region.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU325248 False 544 TUCP 0.46 5 24297481 24301004
XM_026942838.2 True 577 mRNA 0.45 5 24297476 24301032
XM_026942839.2 False 461 mRNA 0.47 4 24297476 24299934

Neighbor

gene id symbol gene type direction distance location
lin54 lin54,LOC107744261 coding downstream 23223 24259708 ~ 24274253 (-)
LOC113543977 NA coding downstream 103603 24118023 ~ 24193873 (-)
LOC117599328 LOC107690397,LOC107716059,LOC107572820 coding downstream 126262 24165377 ~ 24171214 (-)
ptbp3 ptbp3,LOC107658670,LOC107744247 coding downstream 202155 24041031 ~ 24095321 (-)
ak3 ak3,LOC107658667,LOC107685112,LOC107744244,LOC107713310 coding downstream 341426 23944375 ~ 23956050 (-)
srek1ip1 NA coding upstream 5420 24306452 ~ 24309825 (-)
adamts6 adamts6,LOC107685101,LOC107713302,LOC107744255 coding upstream 77153 24378185 ~ 24454955 (-)
trim23 trim23,LOC107658681 coding upstream 164065 24465097 ~ 24477076 (-)
sgtb sgtb,LOC107558703,LOC107667268,LOC107548671,LOC107705058 coding upstream 199830 24500862 ~ 24509560 (-)
smc5 smc5,LOC107726549,LOC107734934 coding upstream 357776 24658808 ~ 24697852 (-)
G274489 NA non-coding downstream 49919 24245196 ~ 24247557 (-)
LOC113543934 NA non-coding downstream 79798 24216715 ~ 24217678 (-)
LOC117599329 NA non-coding downstream 171269 24125158 ~ 24126207 (-)
G274425 NA non-coding downstream 188028 24108470 ~ 24109448 (-)
G274421 NA non-coding downstream 193374 24103011 ~ 24104102 (-)
G274771 NA non-coding upstream 190434 24491466 ~ 24492114 (-)
G274781 nln non-coding upstream 212256 24513288 ~ 24651673 (-)
G274804 NA non-coding upstream 245168 24546200 ~ 24547152 (-)
G274810 NA non-coding upstream 263610 24564642 ~ 24617704 (-)
G274819 NA non-coding upstream 290208 24591240 ~ 24591960 (-)
inip inip,LOC107571239,LOC107658659,LOC107558675 other downstream 44164 24251548 ~ 24253312 (-)
nrarpa nrarp,nrarpa other downstream 434208 23859305 ~ 23863268 (-)
G274342 slc27a4 other downstream 495192 23798359 ~ 23802284 (-)
LOC113544130 rusc2 other downstream 3090306 21189969 ~ 21207170 (-)
drg1 drg1,LOC107744129,LOC107567440,LOC107713382,LOC107555524 other downstream 3516402 20772560 ~ 20781074 (-)

Expression


Co-expression Network