trappc13 (trappc13,LOC107667267,LOC107726564)


Basic Information

Item Value
gene id trappc13
gene name trappc13,LOC107667267,LOC107726564
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 24480599 ~ 24498642 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU325331
TGGAGATGTGTAACACTCGGTCAGTGCACTGGTGCGGAGTTTCAGGCAGGCAGCTGGGAAAACTGGGTCCGAGTGCATCTCTGTCCATCCCACTGCAGCTCCTCTCCTCTGTACAGGGACTACAGagtATATCAGGCCTGAGGCTGACGGACACCTTCCTGAAGCGGACGTACGAGTACGACGACattgcacaggtgtgtgtggtgtgtcctTACCTGAGCCCTGAGACCTGAGGCTCCTCCCACTTCCTGTATCGGTAACCTGCACCTCCATGGACCAACCGCATCGCCATTTTTACACTATCAGCTGACCTGCTTCTTTTAAAGTGTGTGCTTTTAAAGCCTTATTCTGATtttaagtgtgtgaatgttaaTAAAAGAGCGAACTCAGAGCGAAGAGCAGACTTCTGTACGGAGAAATAACTGATATCCACAAACAGCTCATCAAACGTTTAGGGACACGGAGCCTTTATCACTTCTTACATTTCTGAGTAACGCGTGAGTTTTAGTGACTGTAAACACAACACGGGAACACCGTCACGCCCAGTCGAGTCAGATCAACAGCTCTGTCCACAAACCTCTGTGACGTTCtccgagagagggagagagggagagagagagagaaagagggagagagagagagagagacagagagagagagagggagagggagggagagagagagactgcagaAAGATGAGGCGTTTTTAATTATTGTCAGAACATTCACACGTGATTTTGTTTCCATCAGAATAAACCTTGCTAGCCTTTAAAGCAGCTGTTAGTAATGTTTACAGCCCCCTGCTGCCTGTGAGGTGAACTGCAGAGCCCCACCCCCTGTGTTAAACCGCTGTATCCTATAAGAacgagtgggcggggcttaatcCATTTCAGGGCCGGGGAAAGATATAAACAGAAGTCTGAAATGTAGAAACGATCCTCTGCACGGTGATGCTGGAAATCAAAGTTTTGGAAAGTTCTTGAAATTCTGATATTTCTTCCAGGtctagaaataattttaaacattacacaccGCACCTTTAATACAGGATATTATTGCAAAATGACAAGatgattattaatttaaagcattCTGAAACGCTGCGTGTTCCCAAACTTTTGATGAGCAGCACATTTCTGTGTTAaagcataaatacataaaacttCCACAAGGAAAATGAGCttctataaatacatacagaaCATACCACAGGATTactgattattaattaatatttaatatttaatcactCTTTCAGTCGTTTGGTTCTTGCTGaagaaacacacaataaattcAACAGCGATTTCACGTCA
>TU325332
TGGAGATGTGTAACACTCGGTCAGTGCACTGGTGCGGAGTTTCAGGCAGGCAGCTGGGAAAACTGGGTCCGAGTGCATCTCTGTCCATCCCACTGCAGCTCCTCTCCTCTGTACAGGGACTACAGagtATATCAGGCCTGAGGCTGACGGACACCTTCCTGAAGCGGACGTACGAGTACGACGACattgcacaggtgtgtgtggtgtgtcctTACCTGAGCCCTGAGACCTGAGGCTCCTCCCACTTCCTGTATCGGTAACCTGCACCTCCATGGACCAACCGCATCGCCATTTTTACACTATCAGCTGACCTGCTTCTTTTAAAGTGTGTGCTTTTAAAGCCTTATTCTGATtttaagtgtgtgaatgttaaTAAAAGAGCGAACTCAGAGCGAAGAGCAGACTTCTGTACGGAGAAATAACTGATATCCACAAACAGCTCATCAAACGTTTAGGGACACGGAGCCTTTATCACTTCTTACATTTCTGAGTAACGCGTGAGTTTTAGTGACTGTAAACACAACACGGGAACACCGTCACGCCCAGTCGAGTCAGATCAACAGCTCTGTCCACAAACCTCTGTGACGTTCtccgagagagggagagagggagagagagagagaaagagggagagagagagagagagacagagagagagagagagagagagagagagagagggagagagagggagagggagggagagggagggagagagagagactgcagaAAGATGAGGCGTTTTTAATTATTGTCAGAACATTCACACGTGATTTTGTTTCCATCAGAATAAACCTTGCTAGCCTTTAAAGCAGCTGTTAGTAATGTTTACAGCCCCCTGCTGCCTGTGAGGTGAACTGCAGAGCCCCACCCCCTGTGTTAAACCGCTGTATCCTATAAGAacgagtgggcggggcttaatcCATTTCAGGGCCGGGGAAAGATATAAACAGAAGTCTGAAATGTAGAAACGATCCTCTGCACGGTGATGCTGGAAATCAAAGTTTTGGAAAGTTCTTGAAATTCTGATATTTCTTCCAGGtctagaaataattttaaacattacacaccGCACCTTTAATACAGGATATTATTGCAAAATGACAAGatgattattaatttaaagcattCTGAAACGCTGCGTGTTCCCAAACTTTTGATGAGCAGCACATTTCTGTGTTAaagcataaatacataaaacttCCACAAGGAAAATGAGCttctataaatacatacagaaCATACCACAGGATTactgattattaattaatatttaatatttaatcactCTTTCAGTCGTTTGGTTCTTGCTGaagaaacacacaataaattcAACAGCGATTTCACGTCACATTTATTCACCTGtcatttgatctttttttttatatatatttatttatatatatagagagagagctctGTGTTTACACGCATGTTGTGTTTAAAGAGGAAATCACACACTCGGT
>XM_034312918.1
AACGCGGTTTGCTCCTGTGTGCTTGCCGTAGTCAGCTGATCAtgcaggtcaaaggtcaactgCTAGACAAAATGGACGTCAATCAGGCTAAACAGGAGCATCTCCTTGCACTAaaggTGATGCGTCTGACGAAACCCACGCTGTTCACCAACATGCCTGTGACGTGTGAAGACCAAGACCTTCCAGgtgatcTGTTCGGGCGGCTCATGAGGGAGGACCCGTCCACCATAAAGGGGGCGGAGCCTCTGATGCTCGGGGAGATGCTCACGCTGCCGCAGAATTTTggAAATATTTTCCTTGGCGAGACTTTCTCCAGTTACATCAGCGTGCACAACGACAGCAGTCAAGTGGTGAAGGACATTCTAGTGAAGgccgACCTCCAGACCAGCTCTCAGAGATTAAACCTCTCTGCGTCTAACTCTGCCGTGGCCGAGCTCAAACCCGAGTGCTGCATCGATGACGTCATCCACCACGAGGTCAAAGAGATCGGGACACACATCCTGGTGTGTGCCGTCAGCTACACCACTCAGACCGGAGACAAACTGTACTTTAGgaagttttttaaatttcagGTGCTCAAGCCTCTGGATGTGAAAACCAAGTTCTACAACGCAGAGACAGACGAGGTTTTCCTGGAGGCTCAGATCCAGAACATCACCACCTCGTCCATGTTCATGGAAAAAGTGTCTCTGGAACCTTCCATGATGTACAACGTCACCGAACTGAACACAGTGTGCTCAGGAGAGGAGCGCGAGTCGACGTTTGGGAAGATGTCGTACCTGCAGCCCATGGACACGCGGCAGTACCTGTACTGTCTGAAACCCAAGCCGGAGTTCGCAGAGAAGGCAGGAGTCATTAAAGGCGTCACCGTCATCGGCAAACTGGACATCGTGTGGAAGACCAACCTGGGGGAGAGAGGACGCTTACAGACCAGCCAGCTGCAGAGAATGGCTCCGGGATACGGAGATGTTCGGCTCTCGCTGGAGCTCGTTCCAGACACGGTGAACATCGAGGAGCCGTTCGACATCACCTGTAAAATCACAAACTGCAGGTACAAGCACAGGAGTCCTCTCTGtaaaaccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaaatacatGCCATTATATAAACTTCTAAAAATATTTCGAATTT
>XM_034312919.1
AACGCGGTTTGCTCCTGTGTGCTTGCCGTAGTCAGCTGATCAtgcaggtcaaaggtcaactgCTAGACAAAATGGACGTCAATCAGGCTAAACAGGAGCATCTCCTTGCACTAaaggTGATGCGTCTGACGAAACCCACGCTGTTCACCAACATGCCTGTGACGTGTGAAGACCAAGACCTTCCAGgtgatcTGTTCGGGCGGCTCATGAGGGAGGACCCGTCCACCATAAAGGGGGCGGAGCCTCTGATGCTCGGGGAGATGCTCACGCTGCCGCAGAATTTTggAAATATTTTCCTTGGCGAGACTTTCTCCAGTTACATCAGCGTGCACAACGACAGCAGTCAAGTGGTGAAGGACATTCTAGTGAAGgccgACCTCCAGACCAGCTCTCAGAGATTAAACCTCTCTGCGTCTAACTCTGCCGTGGCCGAGCTCAAACCCGAGTGCTGCATCGATGACGTCATCCACCACGAGGTCAAAGAGATCGGGACACACATCCTGGTGTGTGCCGTCAGCTACACCACTCAGACCGGAGACAAACTGTACTTTAGgaagttttttaaatttcagGTGCTCAAGCCTCTGGATGTGAAAACCAAGTTCTACAACGCAGAGAGTGACCTCAGTTCTGTGACAGACGAGGTTTTCCTGGAGGCTCAGATCCAGAACATCACCACCTCGTCCATGTTCATGGAAAAAGTGTCTCTGGAACCTTCCATGATGTACAACGTCACCGAACTGAACACAGTGTGCTCAGGAGAGGAGCGCGAGTCGACGTTTGGGAAGATGTCGTACCTGCAGCCCATGGACACGCGGCAGTACCTGTACTGTCTGAAACCCAAGCCGGAGTTCGCAGAGAAGGCAGGAGTCATTAAAGGCGTCACCGTCATCGGCAAACTGGACATCGTGTGGAAGACCAACCTGGGGGAGAGAGGACGCTTACAGACCAGCCAGCTGCAGAGAATGGCTCCGGGATACGGAGATGTTCGGCTCTCGCTGGAGCTCGTTCCAGACACGGTGAACATCGAGGAGCCGTTCGACATCACCTGTAAAATCACAAACTGCAGGTACAAGCACAGGAGTCCTCTCTGtaaaaccATGTGTAACACTCGGTCAGTGCACTGGTGCGGAGTTTCAGGCAGGCAGCTGGGAAAACTGGGTCCGAGTGCATCTCTGTCCATCCCACTGCAGCTCCTCTCCTCTGTACAGGGACTACAGagtATATCAGGCCTGAGGCTGACGGACACCTTCCTGAAGCGGACGTACGAGTACGACGACattgcacaggtgtgtgtggtgtgtcctTACCTGAGCCCTGAGACCTGAGGCTCCTCCCACTTCCTGTATCGGTAACCTGCACCTCCATGGACCAACCGCATCGCCATTTTTACACTATCAGCTGACCTGCTTCTTTTAAAGTGTGTGCTTTTAAAGCCTTATTCTGATtttaagtgtgtgaatgttaaTAAAAGAGCGAACTCAGA
>XM_034312920.1
AACGCGGTTTGCTCCTGTGTGCTTGCCGTAGTCAGCTGATCAtgcaggtcaaaggtcaactgCTAGACAAAATGGACGTCAATCAGGCTAAACAGGAGCATCTCCTTGCACTAaaggTGATGCGTCTGACGAAACCCACGCTGTTCACCAACATGCCTGTGACGTGTGAAGACCAAGACCTTCCAGgtgatcTGTTCGGGCGGCTCATGAGGGAGGACCCGTCCACCATAAAGGGGGCGGAGCCTCTGATGCTCGGGGAGATGCTCACGCTGCCGCAGAATTTTggAAATATTTTCCTTGGCGAGACTTTCTCCAGTTACATCAGCGTGCACAACGACAGCAGTCAAGTGGTGAAGGACATTCTAGTGAAGgccgACCTCCAGACCAGCTCTCAGAGATTAAACCTCTCTGCGTCTAACTCTGCCGTGGCCGAGCTCAAACCCGAGTGCTGCATCGATGACGTCATCCACCACGAGGTCAAAGAGATCGGGACACACATCCTGGTGTGTGCCGTCAGCTACACCACTCAGACCGGAGACAAACTGTACTTTAGgaagttttttaaatttcagGTGCTCAAGCCTCTGGATGTGAAAACCAAGTTCTACAACGCAGAGACAGACGAGGTTTTCCTGGAGGCTCAGATCCAGAACATCACCACCTCGTCCATGTTCATGGAAAAAGTGTCTCTGGAACCTTCCATGATGTACAACGTCACCGAACTGAACACAGTGTGCTCAGGAGAGGAGCGCGAGTCGACGTTTGGGAAGATGTCGTACCTGCAGCCCATGGACACGCGGCAGTACCTGTACTGTCTGAAACCCAAGCCGGAGTTCGCAGAGAAGGCAGGAGTCATTAAAGGCGTCACCGTCATCGGCAAACTGGACATCGTGTGGAAGACCAACCTGGGGGAGAGAGGACGCTTACAGACCAGCCAGCTGCAGAGAATGGCTCCGGGATACGGAGATGTTCGGCTCTCGCTGGAGCTCGTTCCAGACACGGTGAACATCGAGGAGCCGTTCGACATCACCTGTAAAATCACAAACTGCAGGTACAAGCACAGGAGTCCTCTCTGtaaaaccATGTGTAACACTCGGTCAGTGCACTGGTGCGGAGTTTCAGGCAGGCAGCTGGGAAAACTGGGTCCGAGTGCATCTCTGTCCATCCCACTGCAGCTCCTCTCCTCTGTACAGGGACTACAGagtATATCAGGCCTGAGGCTGACGGACACCTTCCTGAAGCGGACGTACGAGTACGACGACattgcacaggtgtgtgtggtgtgtcctTACCTGAGCCCTGAGACCTGAGGCTCCTCCCACTTCCTGTATCGGTAACCTGCACCTCCATGGACCAACCGCATCGCCATTTTTACACTATCAGCTGACCTGCTTCTTTTAAAGTGTGTGCTTTTAAAGCCTTATTCTGATtttaagtgtgtgaatgttaaTAAAAGAGCGAACTCAGA

Function

symbol description
trappc13 Predicted to be part of TRAPPIII protein complex. Is expressed in notochord. Orthologous to human TRAPPC13 (trafficking protein particle complex subunit 13).

NR:

description
PREDICTED: trafficking protein particle complex subunit 13 isoform X2

GO: NA

KEGG:

id description
K20310 TRAPPC13; trafficking protein particle complex subunit 13

RNA

RNA id representative length rna type GC content exon number start site end site
TU325331 False 1313 lncRNA 0.44 3 24495910 24498527
TU325332 False 1466 lncRNA 0.43 3 24495910 24498642
XM_034312918.1 False 1163 mRNA 0.52 10 24480599 24495654
XM_034312919.1 True 1486 mRNA 0.52 13 24480599 24497242
XM_034312920.1 False 1468 mRNA 0.52 12 24480599 24497242

Neighbor

gene id symbol gene type direction distance location
ppwd1 ppwd1 coding upstream 15499 24457036 ~ 24465100 (+)
cwc27 cwc27,LOC107744252,LOC107713303 coding upstream 121476 24310031 ~ 24359123 (+)
cops4 cops4,csn4,LOC107685106,LOC107558694 coding upstream 183874 24276082 ~ 24296725 (+)
LOC113544070 kiaa1958,LOC107683261,LOC106568575 coding upstream 228531 24233760 ~ 24252068 (+)
ugcg ugcg,LOC107571241,LOC107558686,LOC107713309,LOC107658668 coding upstream 469549 23971438 ~ 24011050 (+)
nln nln,LOC107743138 coding downstream 5221 24503863 ~ 24525223 (+)
apba1b LOC108276879 coding downstream 220087 24718729 ~ 24733547 (+)
G274457 lin54 non-coding upstream 219023 24257907 ~ 24261576 (+)
G274431 NA non-coding upstream 355386 24124736 ~ 24125213 (+)
G274289 NA non-coding upstream 369861 24107648 ~ 24110738 (+)
G274239 NA non-coding upstream 534092 23945616 ~ 23946507 (+)
G274193 NA non-coding upstream 611402 23868854 ~ 23869197 (+)
G274639 NA non-coding downstream 38488 24537130 ~ 24537736 (+)
G274646 NA non-coding downstream 84339 24582981 ~ 24583278 (+)
G274653 NA non-coding downstream 153108 24651750 ~ 24652197 (+)
G274662 NA non-coding downstream 182821 24681463 ~ 24682939 (+)
G274696 NA non-coding downstream 256540 24755182 ~ 24755384 (+)
LOC117599389 NA other upstream 247780 24226154 ~ 24232819 (+)
hsdl2 hsdl2,LOC107558693,LOC107744249,LOC107658673,LOC107685110 other upstream 367746 24103073 ~ 24112853 (+)
cdc37l1 LOC108276758,LOC108433523 other upstream 540467 23937978 ~ 23940132 (+)
LOC113543986 rabgap1,LOC107686418,LOC107744072 other upstream 1094492 23281561 ~ 23386107 (+)
rc3h2 rc3h2,LOC108276736,LOC107595546,LOC106561687 other upstream 1205946 23244560 ~ 23274653 (+)
erbin erbin,erbb2ip other downstream 31336 24529978 ~ 24639642 (+)
zfand5b zfand5,LOC108277070,LOC108428885,LOC107742939,LOC107726558,LOC107705050,LOC107667265 other downstream 101220 24599862 ~ 24658701 (+)

Expression


Co-expression Network