erbin (erbin,erbb2ip)


Basic Information

Item Value
gene id erbin
gene name erbin,erbb2ip
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 24529978 ~ 24639642 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU325389
AGTTCTGctgctctctcttctctctgcactctatattatatattatatatatatgtattatatatattttatattttatagattaAATAATGTTTGAGATTTGATCGGTGAGAATCTCAGAGCGCGGATTGTACCGGGAACAcggttattttttatttctttattgttgtttttgtgttttctgctttttaaatttcagtcattgtgaaaaaaaaactgggatTTTATCTAAATTAAAAGGATTAgcatttatccttttttaaaaaataataataatccggAGTGTTTGTTCTGGAATCGCAGGACAGATCAGAAACTCTCTTTATGTTGTGAAGAAAACTTGTCCGaatccaacttttttttttctgaggtgaAAAAAATGCTAAGCTAATTCGTATTTAGCGATTTAGCGATAGCTAGCTTAGATTAGCATAGCTTAGCATAGCTTAGCATAGCATGCTAACATCCCTTCTGAGGGAAAGCGCTCGGACTCGGCTACTTTCTCTCACAGCGATGCTTCTGACCTGACtggatttaaacatttttaaaacaaaattcctcttaaaaaggaaataaaaggcGAAGAACAAAAAGGTGCCCTGGCTGCTGATTTATTCACTCTTGTTGGATGTCTCTTCATCTGCTGAGCGAGAGCCTGAGACGTGGATCATAAATGAGAAGtgTCTGAGGTGGtggagcttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggtgagtgagtgagtgtgaggaTGAGCTCTAAGCGCAGTCTGTTGGTGCGGCTGGTGCCGTGCCGGTGTTTGCGCGGTGAGGAGGAGACGGTCACCTCTCTGGACTACAGCCACTGCAGCCTGGAGCAGGTTCCCAAAGAGATCTTCAGCTTCGAGAAGACCCTGGAGGAGCTCTACCTGGATGCCAACCAGATCGAGGAGCTCCCCAAGCAACTGTTTAACTGTCAGCTGCTGCACCGGCTGAGTCTGCCCGACAACGACCTGAGCGTCCTGCCCCCGGCCATCGCTAACCTCGTCAACCTCCGAGGCTTCGATGTC
>XM_034312379.1
tgTCTGAGGTGGtggagcttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggtgagtgagtgagtgtgaggaTGAGCTCTAAGCGCAGTCTGTTGGTGCGGCTGGTGCCGTGCCGGTGTTTGCGCGGTGAGGAGGAGACGGTCACCTCTCTGGACTACAGCCACTGCAGCCTGGAGCAGGTTCCCAAAGAGATCTTCAGCTTCGAGAAGACCCTGGAGGAGCTCTACCTGGATGCCAACCAGATCGAGGAGCTCCCCAAGCAACTGTTTAACTGTCAGCTGCTGCACCGGCTGAGTCTGCCCGACAACGACCTGAGCGTCCTGCCCCCGGCCATCGCTAACCTCGTCAACCTCCGAGGCTTCGATGTCGCtgtttcaggtatACAAGAGTTTCCTGAAAATATTAAGAACTGTAAAGTCCTGGCCATCGTTGAAGCGAGTGTAAACCCCATTTCTAAGCTCCCAGAAGGTTTCACACAGCTGCTCAGTCTAACTCAGCTCTACCTGAATGACGCCTTCCTCGAGTTCCTACCAGCGAGCTTCGGCAgACTGACTAAACTACAGATTCTGGAGCTGAGAGAGAATCAGTTAAAGATGCTGCCCAAGAGCATGCATAAGCTGGTGCAGCTGGAACGGTTGGACCTGGGGAGTAATGAGTTCACTGAAGTGccGGAGGTGTTGGAGCAGCTCACGGGCATTAAGGAGCTGTGGATGGACGGGAACAAGCTGACAGTGTTACCCCCGatgaTCGGGACGCTGAAGCAGCTCAAATATCTGGACGTGTCTAAGAACAACCTGGAGATGGTGGACGAGCAGATCAGCAGCTGTGAGAACCTGCAGGACCTGCTGCTGTCCAACAACGCCCTCACACAGCTACCCAGCTCGAtaggctCTCTGAAGAAGCTGACAGCTCTGAAGGTGGATGAGAATCAGCTTGTGTGTTTGCCAGAGTCAATaggaggACTCACGGCTCTGGACGAGTTGGACTGCAGCTTTAACGAGATCGAGTCTCTCCCCACCGCCGTGGGAAAGTGTGTGAACCTGCGCACCTTCGCCGCTGACCACAACTTCCTCACTCACCTGCCTCCTGAGgtgggCTGCTGGAAGAACGTCACTGTGCTGTTCCTGCACTCCAATAAACTGGAGTCTCTGCCTGAGGAGATGGGAGACATGCAGAAGCTCAAGGTCATCAATCTGAGCGACAACAAGTTGAAGAATCTTCCCTACAGCTTCACCAAGCTGAGTCAGATCACTGCTATGTGGCTCTCTGAGAACCAGTCCAAACCCCTGATCCCCCTGCAGAAGGAGGAGGAACCCGACACACACAGAACCGTCCTCACCAACTACATGTTCCCTCAGCAGAGCCGGACCGAGGAGTacgCTCAGAACTCGGACGGTGAGAGCTTCAACCCGACGCTGTGGGAGGAGCAGCGTAAACAGCGAGCGCAAGTGGCCTTCGAGTGTGACGAAGACAAGGATGAGAGAGAGGCTCCTCCACGGgaagGGAACCTGCGGCGTTACCCCACACCGTACCCCGACGAGCTGAAGAACATGGTGAAAACGGCGCAGTCCGTCGCTCACCGCCTCAAAGAGGACGAGTCCGGAGACGAGACGGCCGGAGAGAGGAACCACATCGGCGTGCAGAGTGTAGGAGTGAAGGTGATTGAAACTCCGTGTAGCAACGGCAAAGCGCATGAGCCGGAGTCCAAAGCTCCGGTCCAGAATTCCACTCCGCCTGAGCCGAGGGACGTTCCGGATAACTGTGACACGCAGAGGATCCCGCTGAAGAGCTCGGAGAACACCGGAACCACCGTCAGCTCCGAGGACACACTCGAGGAATCGGAGGAGCTGTCGTCTGATGAAGACGAGATGAAGATAGCTGAGATGAGACCTCCTCTTATCGAGATCTCCATCAACCAGCCCAAAGTGGTGGCCCTCAGCAAGGACAAGAAAGATGACAGTAAAGACGCCGACTCGTTGCTGGATGAAACGGTGGCCAACAGCAACCAGAACAACAGTAACTGTTCCTCACCGTCCCGCATGTCGGACTCGGTGTCTTTAACCACAGACAGCAGCCAGGACAACTCACTGTGTACTCCTGAGAGAGAGACCAAGATCCCCCTCATCCCCAagagcagaCACGAGGATGAGAACCTGAACCAGCTGAAGGAGTCGGTTCCACTGCTGCAGAACTGTAACGGCTCAGAGACCTCGCTGCAGACCGTCCTGAAGAACCAGCGCTCCTACGAGAGCAAAACGGGTACCAACATGTCCGACTACGAGCTGGAGGAGAGGCTGGCGCTCATCGAGAAGGACATCAACAACGGCGTGTCCGAGCCCTACAGCAAGTGGGATCAGATCAACATGAACGTGTCTTACGAGAACATGGAGAAGACCAAGAGCACCTCCACGGTGGAGACTAGGCTCAGCAACAACAACGCCAGCTCTGTGGAGAACCTCGACAACGGGAACGGGAACAGCAGAGCGCAGCCGGGGGAAGGCATGACGAGGCACGAGGTCGTCCGAACGGTCGTGGCGTCCGGCGAAGTGTCTCTGTCTCGCAGCACCGAGGAACTGACCCCTGAGAAGAGATGTCCTCCAGCTACTGTGATGAAATCTCAGAGCATCAGCAACATGGAGGCCGGAGGAATGAAGCTGTACTCCATGGAATGTGAGGTTCCTCCGTATGAGTGTGTAGTGGGTTCTCCGGCTGTCCCGGGCCCCCAGTGCCAGAGCATCGTGCGTTCCAAATCAGCCTCGCTGCTCGACGACCAGCCGCTGCAGGTCCACCCTGGTTCCTCGGGTTCCTCCTCTGACCTCCTGAGCGCCGGCTCCAGAGTTCCGGCCCGCTACCCCCCGCCTCAGTATAACATCCAGTACGCGAGCGGCACTGCGCCTAAAGAGAACCTCTGGTGCCAGCGGACCCCAGTGCCCCCTGATCAGCCCTACCTCCCTCCTCAGCACTCCTTCGCCAACACCAACTACTCCAACCGCAACAACGCGCCGCCGTACCCCCACCAGCCCCAGCAGCGCGGCCCACCCAAAACACCGGACCTGTGGGCGAAGGATCGCATGCTGCCCCCCGGCGTGCAGAGAAACCCCCTGCAGAGGCAGAGCAGCACCTCCTCCAACGCCTCCATGGTCATGGCGGAACCTCGCCGCGTCCCCGGCGCTGACGGTGACTACGTGAGCTACAGAGAGATCCACAGCATGCCCCGAGCTCCTCTGCAGATGAACCTCCAGAGACCCCTGTCAGCCCGCACCTACAGCGTGGACGAGGGGAACGCGCCACGCCCGCACAGCGGCCGCCCTCCACCGCACGAGCTCCCCGAGAGAACCATGTCCGTCTGCGACTTCAGCTACCAGCACGGCAGCCCGAACAAGAGGCCCAGCGTCCGCGTGAAGTCCGAGCACTCGCTGCTGGACGGAGCTCCAGGTGGAGGTGGCAGGGTCCCGGCTGACTGGAGAGACCAGGTCATGAGGCACATCGAGGCCAAGAAGATGGAGAAGATGaCCATGCTGTCTCGGTCTTTGGCCACGCTCTGTGGCAGTCAGAGCTCTCTGGCCCTGAGCGCTGTAGATGGACGGCAGTTTGGAGGCCACAGGCCCAGCgATGAGAGTTTTGGCCCTTATGGACAGCAGGGCTACACCATGGACTCTCACAGAAAAgtGCCTTTGATGAACGGTCAGATGTgcgctcctcctcctgctcctctccGCTCGCAGATGAACTGCGCTCAGGTTCCGATGGCTCGTCATCCGTCCAGAGAGCAGCTCATCGACTACCTGATGCTGAAAGTGTCCCAGCAGCCGCCGTGTCCCCCGCGTCACCCCCACGACACCCTGCCGCACGAGATGCATGTGAAGATTGAGAAGAATCCTGAGCTGGGCTTCAGTATATCGGGAGGAGTGGGAGGACGAGGGAATCCGTTTCGCCCGGACGATACCGGGATCTTCGTGACGAGAGTTCAGCCTGAGGGACCTGCTTCTAAACTCCTCCAACCAGGAGACAAGATCATCCAGGCGAACGGATACAACTTTGTTAACATCGATCACAGGAACGCCGTGTCCCTCCTGAAGAACTTCCCCAGCACGGTGGACCTGGTCATCATCAGAGACATGGCAGCGTAGAGACTCCGCAGAACCCGAGATGTCTGAatgttcacttttatttttgtacacagaggaggaggaggaggagtcaTGTACAGCTGAACTGTTGTTAATGGAAGGATGTGAGAGTTGTGATGAAACGGGGCGAAACCACTGCAGCGTGTGGGCGGAGTCTCTGCAGCCGCCTTCACTGTGGGAGAAACAACGCGCTCGACTAAACTGTCAaattttgtacaattttttttaatcattcacCACAAAGTACAACAAGGAGATGACCAGCAGGGGGCAGGGCTCTCTGTGTGCTGACATCAGCACGCCTTTATTTCtaattctgttatttttaaatcacgTTTCACTTCCTTcgtatattttcttatttaagaGAGTTCTCTGACCTGTGGAGCTGTTGATCTGGAGGTCAATGCTACGTGCTGAGAGCAGATCCTGAATGTAGACCTGGGGCGCGTTACGGAAAGTCTAACCACATCCACACGTCTTCACCGGAACGTTCTGTCACGTCTCCAAGACCGGCTTCAGAACCGAGCTGTTCTGTGAAGAACCTCCacctgaactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagacgtggAGAAGAGGAACCGAGGAGAAGTTATGGAGGACGAAAGAGCGCTGAGATGCAcatctcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgcagtgcatgctgggaaaaatCTGATGTCAGACATTTTATGGATCTCACACCTAAAGGGCTTCCTCTGGAGATGAGTGATTTTCCTCATCCCGAATCAGACCACACCCACCACTCTGGCCACGCCCACCACCTTGACCACGCCCACCACGCTGATGTTTTTACTTCACTCTGAACTCGACTTGCTGATCtcgtctctctctttatcttctttttttatgtttaaatagttGCAGCGTTGAATCACTTGTTTTTACTTCTGGGGCGTGGGACACGGACGGACGAACGAGAAGGACGTGTGAAGTGCCAACTGACCCTGACATGTCTGAGTTAGGGTGAAAGGTCGTGACCTTTTTGACCCTGAGCAATACTCGCTGATCCACGCAGTCGAGAGAGCAATAGCAAGACTTCACTTTCAGAACAGATTTGTCcgagtgctt

Function

symbol description
erbin Predicted to enable ErbB-2 class receptor binding activity. Predicted to be involved in several processes, including establishment or maintenance of epithelial cell apical/basal polarity; receptor clustering; and receptor localization to synapse. Predicted to act upstream of or within negative regulation of NF-kappaB transcription factor activity and signal transduction. Predicted to be active in basolateral plasma membrane and cell junction. Is expressed in intestine. Orthologous to human ERBIN (erbb2 interacting protein).
erbb2ip erbb2-interacting protein

NR:

description
PREDICTED: protein LAP2 isoform X1

GO: NA

KEGG:

id description
K12796 ERBIN, ERBB2IP; erbb2-interacting protein

RNA

RNA id representative length rna type GC content exon number start site end site
TU325389 False 1072 TUCP 0.43 4 24529978 24587552
XM_034312379.1 True 5276 mRNA 0.56 25 24585517 24639642

Neighbor

gene id symbol gene type direction distance location
nln nln,LOC107743138 coding upstream 4755 24503863 ~ 24525223 (+)
ppwd1 ppwd1 coding upstream 64878 24457036 ~ 24465100 (+)
cwc27 cwc27,LOC107744252,LOC107713303 coding upstream 170855 24310031 ~ 24359123 (+)
cops4 cops4,csn4,LOC107685106,LOC107558694 coding upstream 233253 24276082 ~ 24296725 (+)
LOC113544070 kiaa1958,LOC107683261,LOC106568575 coding upstream 277910 24233760 ~ 24252068 (+)
apba1b LOC108276879 coding downstream 79087 24718729 ~ 24733547 (+)
G274624 NA non-coding upstream 38122 24491415 ~ 24491856 (+)
G274583 NA non-coding upstream 38777 24403023 ~ 24491201 (+)
G274457 lin54 non-coding upstream 268402 24257907 ~ 24261576 (+)
G274431 NA non-coding upstream 404765 24124736 ~ 24125213 (+)
G274289 NA non-coding upstream 419240 24107648 ~ 24110738 (+)
G274653 NA non-coding downstream 12108 24651750 ~ 24652197 (+)
G274662 NA non-coding downstream 41821 24681463 ~ 24682939 (+)
G274696 NA non-coding downstream 115540 24755182 ~ 24755384 (+)
G274710 NA non-coding downstream 139419 24779061 ~ 24779322 (+)
G274714 NA non-coding downstream 143254 24782896 ~ 24783522 (+)
trappc13 trappc13,LOC107667267,LOC107726564 other upstream 31336 24480599 ~ 24498642 (+)
LOC117599389 NA other upstream 297159 24226154 ~ 24232819 (+)
hsdl2 hsdl2,LOC107558693,LOC107744249,LOC107658673,LOC107685110 other upstream 417125 24103073 ~ 24112853 (+)
cdc37l1 LOC108276758,LOC108433523 other upstream 589846 23937978 ~ 23940132 (+)
LOC113543986 rabgap1,LOC107686418,LOC107744072 other upstream 1143871 23281561 ~ 23386107 (+)

Expression


Co-expression Network