G274639


Basic Information

Item Value
gene id G274639
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 24537130 ~ 24537736 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU325393
GGAAAAGGCTGCTTCAGttgcgtgtgtgtttaattttgctCGTACAGACGTGACAGTTCTGCACTCTGTATGACGTGATGCTGTATAACGTACAGTAGCGTCAGGTGAAGCGTCAGGTGAAGCGTCAGGTGAAGCGTCAGGTGAAGCGTCAGAAGCACGTCACGATGCACAATATATATATCACAAtgttcactgtccactttattaggaacatctgtagcCTTGCTCTCGCTTATTttcagttatccaatcagccaatcacgtgtcagataaaatataaaatcatacacatgccgatcaagagcttcagttaatgttcacatcaaacatcagaaacatCTCAGTGGCTCTCCTGAAGCTACTGACCCGACCTGGACAGCTGTGTGCGCTGTTctcggctgacaggagaggaacctgatgtggtcttctgctgttgttccTCAGGATTCACCGTGTTGCAGTTTCTGAGCTGctgttctgctcaccacggtggtaaagagtgattatttgaggtTCCATAACCATCCTGTCAGCTTTAGTCTGatcattttatacattgcactCCTGCCGatacgtgattggc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU325393 True 583 lncRNA 0.46 2 24537130 24537736

Neighbor

gene id symbol gene type direction distance location
nln nln,LOC107743138 coding upstream 11907 24503863 ~ 24525223 (+)
ppwd1 ppwd1 coding upstream 72030 24457036 ~ 24465100 (+)
cwc27 cwc27,LOC107744252,LOC107713303 coding upstream 178007 24310031 ~ 24359123 (+)
cops4 cops4,csn4,LOC107685106,LOC107558694 coding upstream 240405 24276082 ~ 24296725 (+)
LOC113544070 kiaa1958,LOC107683261,LOC106568575 coding upstream 285062 24233760 ~ 24252068 (+)
apba1b LOC108276879 coding downstream 180993 24718729 ~ 24733547 (+)
G274624 NA non-coding upstream 45274 24491415 ~ 24491856 (+)
G274583 NA non-coding upstream 45929 24403023 ~ 24491201 (+)
G274457 lin54 non-coding upstream 275554 24257907 ~ 24261576 (+)
G274431 NA non-coding upstream 411917 24124736 ~ 24125213 (+)
G274289 NA non-coding upstream 426392 24107648 ~ 24110738 (+)
G274646 NA non-coding downstream 45245 24582981 ~ 24583278 (+)
G274653 NA non-coding downstream 114014 24651750 ~ 24652197 (+)
G274662 NA non-coding downstream 143727 24681463 ~ 24682939 (+)
G274696 NA non-coding downstream 217446 24755182 ~ 24755384 (+)
G274710 NA non-coding downstream 241325 24779061 ~ 24779322 (+)
trappc13 trappc13,LOC107667267,LOC107726564 other upstream 38488 24480599 ~ 24498642 (+)
LOC117599389 NA other upstream 304311 24226154 ~ 24232819 (+)
hsdl2 hsdl2,LOC107558693,LOC107744249,LOC107658673,LOC107685110 other upstream 424277 24103073 ~ 24112853 (+)
cdc37l1 LOC108276758,LOC108433523 other upstream 596998 23937978 ~ 23940132 (+)
LOC113543986 rabgap1,LOC107686418,LOC107744072 other upstream 1151023 23281561 ~ 23386107 (+)
zfand5b zfand5,LOC108277070,LOC108428885,LOC107742939,LOC107726558,LOC107705050,LOC107667265 other downstream 62126 24599862 ~ 24658701 (+)

Expression


Co-expression Network