zfand5b (zfand5,LOC108277070,LOC108428885,LOC107742939,LOC107726558,LOC107705050,LOC107667265)


Basic Information

Item Value
gene id zfand5b
gene name zfand5,LOC108277070,LOC108428885,LOC107742939,LOC107726558,LOC107705050,LOC107667265
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 24599862 ~ 24658701 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU325402
ttttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctctgcacaTTGGCGTTTCTGTACGAGACTCGTTCAGTTACGCAGTAAAACTGTCGTCTGTCGTTTCAGTTCTGCGGTTTGTACAAGCGAACCccttattatatttattatatgtattgCGCATCTAATCTTGTTACCCAACATTACAAAATTGtatcatgtaaataaaattatgtacAGAG
>XM_034312313.1
AAGAAAGCAACAAACAGCTCGCGACGGGGTTCAGACGCTCAGAGCGCGGCGGAGGGAGAAGCACCTCAGCGCAGTGTTCATCTCATTCACAATAAAACTCCACTTCACCTTTCCGCAGTATTGACGTCTTGTTTATTAAAGactGAGCCATGGCCCAGGAGACGAACCAGAGCCCCGTGCCCATGCTCTGCACCACCGGCTGTGGGTTCTACGGGAACCCCAGGACTAACGGCATGTGTTCGGTGTGTTATAAGGAACATCTCTCCAGACAGAACAGCGGAGGTGTGAGTCCTCTCAGTAACATGGGTTCGAGCAGTGTAACCAGTAGTCCCACCTCCGAGGCGTCTGCCATCCAGATCATCGAGGCCAGTTTAAACACTTCTGCGAGTGACGCCGAGTCGCCCGCCGGGGCCGCCGCGGCACTTCCTGTTACGCAGCAGATGACTGAGATGAGCATTTCTTGCGAAGAGGAAGTGGCAACGCCTAAAGTAGAAATTCCTGAACCTGTTGTAACTCAGCCCACggcttcttcttcctcttcggTGAACACGGCGGTCAGCGCCGAGACCAAAACCCCCGACGCCCCCAAACCCAAGAAAAACCGCTGCTTCATGTGCCGCAAGAAGGTCGGCCTTACAGGGTTCGACTGTCGCTGTGGAAACCTCTTCTGTGGACTTCACCGTTACTCAGACAAGCACAACTGCCCCTACGACTACAAAGCCGAGGCCGCGGCCAAGATCCGCAAAGAGAACCCCGTGGTGGTGGCCGACAAGATCCAGAGAATATAGATCACCCGCGCGTCTCTTTggctttgacctttgaccctcaTTTCCGGGAGAGAGATAACgtgtaaaaagataaaaaaggaCTCGCACTTGACCTGCGATCTAAAggactatttttatttttaatgacgtTGATCTTGTTTTTCAGCCGATGCATGAGTGGAGtgatctggtttttttttgtttttgtcctcgGTGTATGATGGAGTTTAAAAGCGGGGGAAAGTGGGCGGGGTTTAGATCACATCTCCTCGTGTGCGGTTGGTGTGGTGttggggggaggggggtgtTGTGTTAAAGGCGGACCGTCTTTGTGATTGTCGAATCGTCGTGATTGTGCGCGTCTCGTGTCTCAGCGTGGAGGACGGACACGTCGTAGCCTGCGGGACTTCACACGACTGTTACGGCTCTGACTCGAGCGCCGTCAGGGCAGCAGTGCATGGCTGGCTCATGTagcacaaagaaaaaacaaaacacaatggacgctctcttcttctcttctcttcttcttttcctctagTTTGAAGAGTTCACTGTCTCCCCATGGCTCGTGGCATGACTCCCACAACTCTAGAGTTAGCCTTCACAGCGTTAGCTTCGTTTATTCGCCCGTGCCTCGGACCGTCCCACAGCagactgtttctctttcttttcttttcctctttgttttGGAGTGAattatttttccttctgttcGAGTGACACTTCTATCCCGGTTGGTAAAAGTTTTAGTGAAGCACAGACGGATTAAATGCTAAGGCTTTGTATTCCTGCGTGTTGGAGTTTTAGCGGGCGGCGGGATTAAAGGGTGACCTGCATGGCTAGTGAAATAACTACTAAAGTACGTTTAGGTTTTTAACAGCTACCTGCTCATAGgccttgttttttaattaataatccaCGTCTGTACTgaatgttgctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggagggagaGTCACATGGTGCTGAGTGTCATGCAGTGTTCCCACTGTGGTGTGAAGGGATGCTTGAGTGTTAGTGTGAAATATtcagttcattatttttgtgtgtgtgtgtgtgtgtgtgtctctgcacaTTGGCGTTTCTGTACGAGACTCGTTCAGTTACGCAGTAAAACTGTCGTCTGTCGTTTCAGTTCTGCGGTTTGTACAAGCGAACCccttattatatttattatatgtattgCGCATCTAATCTTGTTACCCAACATTACAAAATTGtatcatgtaaataaaattatgtacAGAGATCTAA
>XM_034312314.1
gatCAGTGCCAGGCTTGTTGTGAAACACACCTCATGATGATGGATCTCGGCTCGACCCTCTCAGGCTCGGAACAGCGCGTCTCCTGTTTGTTCTCGGCTGATCGTCACCTCGCTTGCGTGTTTACGTGTTTTCGGGTCGTactGAGCCATGGCCCAGGAGACGAACCAGAGCCCCGTGCCCATGCTCTGCACCACCGGCTGTGGGTTCTACGGGAACCCCAGGACTAACGGCATGTGTTCGGTGTGTTATAAGGAACATCTCTCCAGACAGAACAGCGGAGGTGTGAGTCCTCTCAGTAACATGGGTTCGAGCAGTGTAACCAGTAGTCCCACCTCCGAGGCGTCTGCCATCCAGATCATCGAGGCCAGTTTAAACACTTCTGCGAGTGACGCCGAGTCGCCCGCCGGGGCCGCCGCGGCACTTCCTGTTACGCAGCAGATGACTGAGATGAGCATTTCTTGCGAAGAGGAAGTGGCAACGCCTAAAGTAGAAATTCCTGAACCTGTTGTAACTCAGCCCACggcttcttcttcctcttcggTGAACACGGCGGTCAGCGCCGAGACCAAAACCCCCGACGCCCCCAAACCCAAGAAAAACCGCTGCTTCATGTGCCGCAAGAAGGTCGGCCTTACAGGGTTCGACTGTCGCTGTGGAAACCTCTTCTGTGGACTTCACCGTTACTCAGACAAGCACAACTGCCCCTACGACTACAAAGCCGAGGCCGCGGCCAAGATCCGCAAAGAGAACCCCGTGGTGGTGGCCGACAAGATCCAGAGAATATAGATCACCCGCGCGTCTCTTTggctttgacctttgaccctcaTTTCCGGGAGAGAGATAACgtgtaaaaagataaaaaaggaCTCGCACTTGACCTGCGATCTAAAggactatttttatttttaatgacgtTGATCTTGTTTTTCAGCCGATGCATGAGTGGAGtgatctggtttttttttgtttttgtcctcgGTGTATGATGGAGTTTAAAAGCGGGGGAAAGTGGGCGGGGTTTAGATCACATCTCCTCGTGTGCGGTTGGTGTGGTGttggggggaggggggtgtTGTGTTAAAGGCGGACCGTCTTTGTGATTGTCGAATCGTCGTGATTGTGCGCGTCTCGTGTCTCAGCGTGGAGGACGGACACGTCGTAGCCTGCGGGACTTCACACGACTGTTACGGCTCTGACTCGAGCGCCGTCAGGGCAGCAGTGCATGGCTGGCTCATGTagcacaaagaaaaaacaaaacacaatggacgctctcttcttctcttctcttcttcttttcctctagTTTGAAGAGTTCACTGTCTCCCCATGGCTCGTGGCATGACTCCCACAACTCTAGAGTTAGCCTTCACAGCGTTAGCTTCGTTTATTCGCCCGTGCCTCGGACCGTCCCACAGCagactgtttctctttcttttcttttcctctttgttttGGAGTGAattatttttccttctgttcGAGTGACACTTCTATCCCGGTTGGTAAAAGTTTTAGTGAAGCACAGACGGATTAAATGCTAAGGCTTTGTATTCCTGCGTGTTGGAGTTTTAGCGGGCGGCGGGATTAAAGGGTGACCTGCATGGCTAGTGAAATAACTACTAAAGTACGTTTAGGTTTTTAACAGCTACCTGCTCATAGgccttgttttttaattaataatccaCGTCTGTACTgaatgttgctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggagggagaGTCACATGGTGCTGAGTGTCATGCAGTGTTCCCACTGTGGTGTGAAGGGATGCTTGAGTGTTAGTGTGAAATATtcagttcattatttttgtgtgtgtgtgtgtgtgtgtgtctctgcacaTTGGCGTTTCTGTACGAGACTCGTTCAGTTACGCAGTAAAACTGTCGTCTGTCGTTTCAGTTCTGCGGTTTGTACAAGCGAACCccttattatatttattatatgtattgCGCATCTAATCTTGTTACCCAACATTACAAAATTGtatcatgtaaataaaattatgtacAGAGATCTAA

Function

symbol description
zfand5 Predicted to enable DNA binding activity and zinc ion binding activity. Predicted to act upstream of or within several processes, including face development; fibroblast migration; and platelet-derived growth factor receptor signaling pathway. Predicted to be located in cytoplasm.

NR:

description
AN1-type zinc finger protein 5

GO:

id name namespace
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K24687 ZFAND5_6; AN1-type zinc finger protein 5/6

RNA

RNA id representative length rna type GC content exon number start site end site
TU325402 False 222 lncRNA 0.38 2 24599862 24658695
XM_034312313.1 True 2051 mRNA 0.49 5 24649251 24658701
XM_034312314.1 False 2050 mRNA 0.50 5 24654647 24658701

Neighbor

gene id symbol gene type direction distance location
nln nln,LOC107743138 coding upstream 74639 24503863 ~ 24525223 (+)
ppwd1 ppwd1 coding upstream 134762 24457036 ~ 24465100 (+)
cwc27 cwc27,LOC107744252,LOC107713303 coding upstream 240739 24310031 ~ 24359123 (+)
cops4 cops4,csn4,LOC107685106,LOC107558694 coding upstream 303137 24276082 ~ 24296725 (+)
LOC113544070 kiaa1958,LOC107683261,LOC106568575 coding upstream 347794 24233760 ~ 24252068 (+)
apba1b LOC108276879 coding downstream 60028 24718729 ~ 24733547 (+)
G274646 NA non-coding upstream 16584 24582981 ~ 24583278 (+)
G274639 NA non-coding upstream 62126 24537130 ~ 24537736 (+)
G274624 NA non-coding upstream 108006 24491415 ~ 24491856 (+)
G274583 NA non-coding upstream 108661 24403023 ~ 24491201 (+)
G274457 lin54 non-coding upstream 338286 24257907 ~ 24261576 (+)
G274662 NA non-coding downstream 22762 24681463 ~ 24682939 (+)
G274696 NA non-coding downstream 96481 24755182 ~ 24755384 (+)
G274710 NA non-coding downstream 120360 24779061 ~ 24779322 (+)
G274714 NA non-coding downstream 124195 24782896 ~ 24783522 (+)
G274704 NA non-coding downstream 126098 24784799 ~ 24808503 (+)
trappc13 trappc13,LOC107667267,LOC107726564 other upstream 101220 24480599 ~ 24498642 (+)
LOC117599389 NA other upstream 367043 24226154 ~ 24232819 (+)
hsdl2 hsdl2,LOC107558693,LOC107744249,LOC107658673,LOC107685110 other upstream 487009 24103073 ~ 24112853 (+)
cdc37l1 LOC108276758,LOC108433523 other upstream 659730 23937978 ~ 23940132 (+)
LOC113543986 rabgap1,LOC107686418,LOC107744072 other upstream 1213755 23281561 ~ 23386107 (+)

Expression


Co-expression Network