Fish Transcriptome and Expression Database

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economic fish

G274696

Basic Information

Item	Value
gene id	G274696
gene name	NA
gene type	non-coding
species	striped catfish (Pangasianodon hypophthalmus)
category of species	economic fish

Chromosome Information

Item	Value
chromosome id	NC_047611.1
NCBI id	CM018557.1
chromosome length	24879021
location	24755182 ~ 24755384 (+)
genome version	GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU325454
gttaaagctcattgctgagtgtgtgtgtgtgtgtgtgtgtgtgtgttatggtggtgttaaagctcattgctgagtgtgtgtgtgtgtgtgtgtgtgtgttatggtggtgttaaagctcattgctgagtgtgtgtgtgtgtgtgtgtgtgttatggtggtgttaaagctcattgctgagtgtgtgtgtgtgtgtgtgtgtgtgt

Function

GO: NA

KEGG: NA

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TU325454	True	203	lncRNA	0.45	1	24755182	24755384

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
apba1b	LOC108276879	coding	upstream	21635	24718729 ~ 24733547 (+)
nln	nln,LOC107743138	coding	upstream	229959	24503863 ~ 24525223 (+)
ppwd1	ppwd1	coding	upstream	290082	24457036 ~ 24465100 (+)
cwc27	cwc27,LOC107744252,LOC107713303	coding	upstream	396059	24310031 ~ 24359123 (+)
cops4	cops4,csn4,LOC107685106,LOC107558694	coding	upstream	458457	24276082 ~ 24296725 (+)
G274662	NA	non-coding	upstream	72243	24681463 ~ 24682939 (+)
G274653	NA	non-coding	upstream	102985	24651750 ~ 24652197 (+)
G274646	NA	non-coding	upstream	171904	24582981 ~ 24583278 (+)
G274639	NA	non-coding	upstream	217446	24537130 ~ 24537736 (+)
G274624	NA	non-coding	upstream	263326	24491415 ~ 24491856 (+)
G274710	NA	non-coding	downstream	23677	24779061 ~ 24779322 (+)
G274714	NA	non-coding	downstream	27512	24782896 ~ 24783522 (+)
G274704	NA	non-coding	downstream	29415	24784799 ~ 24808503 (+)
zfand5b	zfand5,LOC108277070,LOC108428885,LOC107742939,LOC107726558,LOC107705050,LOC107667265	other	upstream	96481	24599862 ~ 24658701 (+)
erbin	erbin,erbb2ip	other	upstream	115540	24529978 ~ 24639642 (+)
trappc13	trappc13,LOC107667267,LOC107726564	other	upstream	256540	24480599 ~ 24498642 (+)
LOC117599389	NA	other	upstream	522363	24226154 ~ 24232819 (+)
hsdl2	hsdl2,LOC107558693,LOC107744249,LOC107658673,LOC107685110	other	upstream	642329	24103073 ~ 24112853 (+)

Expression

Co-expression Network