G274771


Basic Information

Item Value
gene id G274771
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 24491466 ~ 24492114 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU325539
tgtttgtgtttaaaggagagtgtttgtgtttaaaggagagtgtttgtgtttaaaggagagtgtttgtgtttaaaggtgagtgtttgtgtttaaaggtgagtgtttgtgtttaaagttgagtgtttaaaggagagtgtttgtgtttaaaggagagtgtttgtgttaaaggagagtgtttgtgtttaaaggagagtgtttgtgtttaaaggtgagtgtttgtgtttaaaggagagtgtttgtgtttaaaggagagtgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU325539 True 256 lncRNA 0.35 3 24491466 24492114

Neighbor

gene id symbol gene type direction distance location
trim23 trim23,LOC107658681 coding downstream 14390 24465097 ~ 24477076 (-)
adamts6 adamts6,LOC107685101,LOC107713302,LOC107744255 coding downstream 36511 24378185 ~ 24454955 (-)
srek1ip1 NA coding downstream 181641 24306452 ~ 24309825 (-)
lin54 lin54,LOC107744261 coding downstream 217213 24259708 ~ 24274253 (-)
LOC113543977 NA coding downstream 297593 24118023 ~ 24193873 (-)
sgtb sgtb,LOC107558703,LOC107667268,LOC107548671,LOC107705058 coding upstream 8748 24500862 ~ 24509560 (-)
smc5 smc5,LOC107726549,LOC107734934 coding upstream 166694 24658808 ~ 24697852 (-)
mamdc2b LOC108277069 coding upstream 206677 24698791 ~ 24718235 (-)
tjp2a NA coding upstream 241434 24733548 ~ 24749451 (-)
pip5k1ba pip5k1b,LOC108428883,LOC107726562,LOC107705047,LOC107667273 coding upstream 269102 24761216 ~ 24777827 (-)
G274489 NA non-coding downstream 243909 24245196 ~ 24247557 (-)
LOC113543934 NA non-coding downstream 273788 24216715 ~ 24217678 (-)
LOC117599329 NA non-coding downstream 365259 24125158 ~ 24126207 (-)
G274425 NA non-coding downstream 382018 24108470 ~ 24109448 (-)
G274421 NA non-coding downstream 387364 24103011 ~ 24104102 (-)
G274781 nln non-coding upstream 21174 24513288 ~ 24651673 (-)
G274804 NA non-coding upstream 54086 24546200 ~ 24547152 (-)
G274810 NA non-coding upstream 72528 24564642 ~ 24617704 (-)
G274819 NA non-coding upstream 99126 24591240 ~ 24591960 (-)
G274808 NA non-coding upstream 104106 24596220 ~ 24678758 (-)
LOC113544170 plac8 other downstream 190434 24297476 ~ 24301032 (-)
inip inip,LOC107571239,LOC107658659,LOC107558675 other downstream 238154 24251548 ~ 24253312 (-)
nrarpa nrarp,nrarpa other downstream 628198 23859305 ~ 23863268 (-)
G274342 slc27a4 other downstream 689182 23798359 ~ 23802284 (-)
LOC113544130 rusc2 other downstream 3284296 21189969 ~ 21207170 (-)

Expression


Co-expression Network