G274781 (nln)



Basic Information


Item Value
gene id G274781
gene name nln
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 24513288 ~ 24651673 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>TU325551
cacacacactctcagctgATTTAATCATTAACTGAAAACAAACATGACAAAAGTTTAGCGCAGCAAAATAAACActctacaacattaaacacgacatttatataataaacaaacagatttattaaaCACTCGCCTGCTCAGTttactcacaacacacacactgtgctttaATGAGCGTTTTATCATAAATAAGATCTATTTAAATCTTAATAAATCTAAAGAAATAAGCTTGGATGTGTAGTTATTTCATTAATGAGTGAATATTTAATGAGTTTCATACAGgaagattttagttttttaatctaaatgtCGTAATTATCTTAAACTGCTCTAACTGCACATGTGTTATCAGTCAggtaaagttttaaataaagttttaaataatgaaatgttcagTGTTGGATTTTGTTCATGTGTCTGTACACGATGTACAGGGCAGCGCTAAGctcgggttgccagattggggtCTTTTAATCCTCCTTCCTTTTCAGCTACAATCAGAAACTAAATTAAATCTAGAATAAATCACAATCACGAGGACACACTGATtacagccctgtgtgtgtgtgtctgtgtgtgtgagagagagagtcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgcaggttctGCTTACACACTCACCAGCGTAATCCAGCTTGGCCTCTGCTAGAACCTGCAGCGTGTTCTCATAACACACCTTCTCCACGTCCACCGCCGCCACCGAGTCGTACGCATGCTTTACCCTCTGCATCAGCTTCTCGGTCCGCTGCCGGATCTGCTCCGGGCTCAGGTCCCACCTCAGCTCGCTCCGGTTCTCACAGGAACTCGAACAACTTTTAGCTGAAATGTCCAGCGTGTTCAGGAGAGTCATTCTGAGCCTCGAGCAGAACGCAaaca

Function


symbol description
nln Predicted to enable metalloendopeptidase activity. Predicted to be involved in peptide metabolic process and proteolysis. Predicted to be active in mitochondrial intermembrane space. Is expressed in hypaxial myotome region; musculature system; myotome; and pectoral fin musculature. Orthologous to human NLN (neurolysin).

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU325551 True 900 lncRNA 0.41 3 24513288 24651673
Loading

Neighbor


gene id symbol gene type direction distance location
sgtb sgtb,LOC107558703,LOC107667268,LOC107548671,LOC107705058 coding downstream 3728 24500862 ~ 24509560 (-)
trim23 trim23,LOC107658681 coding downstream 36212 24465097 ~ 24477076 (-)
adamts6 adamts6,LOC107685101,LOC107713302,LOC107744255 coding downstream 58333 24378185 ~ 24454955 (-)
srek1ip1 NA coding downstream 203463 24306452 ~ 24309825 (-)
lin54 lin54,LOC107744261 coding downstream 239035 24259708 ~ 24274253 (-)
smc5 smc5,LOC107726549,LOC107734934 coding upstream 7135 24658808 ~ 24697852 (-)
mamdc2b LOC108277069 coding upstream 47118 24698791 ~ 24718235 (-)
tjp2a NA coding upstream 81875 24733548 ~ 24749451 (-)
pip5k1ba pip5k1b,LOC108428883,LOC107726562,LOC107705047,LOC107667273 coding upstream 109543 24761216 ~ 24777827 (-)
actr1 actr1,acty,LOC106585571,LOC105889177,LOC106563059,LOC107602067 coding upstream 141881 24793554 ~ 24797730 (-)
G274771 NA non-coding downstream 21174 24491466 ~ 24492114 (-)
G274489 NA non-coding downstream 265731 24245196 ~ 24247557 (-)
LOC113543934 NA non-coding downstream 295610 24216715 ~ 24217678 (-)
LOC117599329 NA non-coding downstream 387081 24125158 ~ 24126207 (-)
G274425 NA non-coding downstream 403840 24108470 ~ 24109448 (-)
G274837 NA non-coding upstream 42900 24694573 ~ 24696111 (-)
G274841 NA non-coding upstream 67258 24718931 ~ 24719131 (-)
G274856 NA non-coding upstream 97972 24749645 ~ 24749854 (-)
G274857 NA non-coding upstream 103507 24755180 ~ 24755382 (-)
G274858 NA non-coding upstream 128446 24780119 ~ 24780386 (-)
LOC113544170 plac8 other downstream 212256 24297476 ~ 24301032 (-)
inip inip,LOC107571239,LOC107658659,LOC107558675 other downstream 259976 24251548 ~ 24253312 (-)
nrarpa nrarp,nrarpa other downstream 650020 23859305 ~ 23863268 (-)
G274342 slc27a4 other downstream 711004 23798359 ~ 23802284 (-)
LOC113544130 rusc2 other downstream 3306118 21189969 ~ 21207170 (-)

Expression


G274781(nln) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 2.
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G274781(nln) Expression in each Bioproject

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G274781(nln) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 14.
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Co-expression Network