Item | Value |
---|---|
gene id | G274781 |
gene name | nln |
gene type | non-coding |
species | striped catfish (Pangasianodon hypophthalmus) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_047611.1 |
NCBI id | CM018557.1 |
chromosome length | 24879021 |
location | 24513288 ~ 24651673 (-) |
genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
symbol | description |
---|---|
nln | Predicted to enable metalloendopeptidase activity. Predicted to be involved in peptide metabolic process and proteolysis. Predicted to be active in mitochondrial intermembrane space. Is expressed in hypaxial myotome region; musculature system; myotome; and pectoral fin musculature. Orthologous to human NLN (neurolysin). |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
TU325551 | True | 900 | lncRNA | 0.41 | 3 | 24513288 | 24651673 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
sgtb | sgtb,LOC107558703,LOC107667268,LOC107548671,LOC107705058 | coding | downstream | 3728 | 24500862 ~ 24509560 (-) |
trim23 | trim23,LOC107658681 | coding | downstream | 36212 | 24465097 ~ 24477076 (-) |
adamts6 | adamts6,LOC107685101,LOC107713302,LOC107744255 | coding | downstream | 58333 | 24378185 ~ 24454955 (-) |
srek1ip1 | NA | coding | downstream | 203463 | 24306452 ~ 24309825 (-) |
lin54 | lin54,LOC107744261 | coding | downstream | 239035 | 24259708 ~ 24274253 (-) |
smc5 | smc5,LOC107726549,LOC107734934 | coding | upstream | 7135 | 24658808 ~ 24697852 (-) |
mamdc2b | LOC108277069 | coding | upstream | 47118 | 24698791 ~ 24718235 (-) |
tjp2a | NA | coding | upstream | 81875 | 24733548 ~ 24749451 (-) |
pip5k1ba | pip5k1b,LOC108428883,LOC107726562,LOC107705047,LOC107667273 | coding | upstream | 109543 | 24761216 ~ 24777827 (-) |
actr1 | actr1,acty,LOC106585571,LOC105889177,LOC106563059,LOC107602067 | coding | upstream | 141881 | 24793554 ~ 24797730 (-) |
G274771 | NA | non-coding | downstream | 21174 | 24491466 ~ 24492114 (-) |
G274489 | NA | non-coding | downstream | 265731 | 24245196 ~ 24247557 (-) |
LOC113543934 | NA | non-coding | downstream | 295610 | 24216715 ~ 24217678 (-) |
LOC117599329 | NA | non-coding | downstream | 387081 | 24125158 ~ 24126207 (-) |
G274425 | NA | non-coding | downstream | 403840 | 24108470 ~ 24109448 (-) |
G274837 | NA | non-coding | upstream | 42900 | 24694573 ~ 24696111 (-) |
G274841 | NA | non-coding | upstream | 67258 | 24718931 ~ 24719131 (-) |
G274856 | NA | non-coding | upstream | 97972 | 24749645 ~ 24749854 (-) |
G274857 | NA | non-coding | upstream | 103507 | 24755180 ~ 24755382 (-) |
G274858 | NA | non-coding | upstream | 128446 | 24780119 ~ 24780386 (-) |
LOC113544170 | plac8 | other | downstream | 212256 | 24297476 ~ 24301032 (-) |
inip | inip,LOC107571239,LOC107658659,LOC107558675 | other | downstream | 259976 | 24251548 ~ 24253312 (-) |
nrarpa | nrarp,nrarpa | other | downstream | 650020 | 23859305 ~ 23863268 (-) |
G274342 | slc27a4 | other | downstream | 711004 | 23798359 ~ 23802284 (-) |
LOC113544130 | rusc2 | other | downstream | 3306118 | 21189969 ~ 21207170 (-) |