G274810


Basic Information

Item Value
gene id G274810
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 24564642 ~ 24617704 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU325607
AgagttagctcgctttgctaatctaatctgagaatgaaGCTGAGTAACATGTAAATCACACGACTGATCTGAccttcacactgattagtgcgttatttaaGGTAGCGTTACCGTAAGACAAGAATTTCAGATTGGATTCGGGGTTTCTGATTAGAATTGAGCTCAGATCAGATCTCGTGGCGTTGTGTCTGAAACACGGCAGCTCTTTGTTACTGTGAATAACATCCTGTTTCTCCTGCACGCTCCTACACCGACCACGACATCACAGCGCCTCACAGCCTCGCACATCACTGCCTCAAATTCTGTCCTGACTGCACAAACGCTCCACTAATCacatcatcaaacacacacgAGCGAAAGATGAAACGCACATCGGAACACCGTGAACAACAGGATGTAATTTAATGATCTGAGACAATCCAGATGAGGAACAGCTGCTCTGCTTCTGCACAagcaagagacaaagagaaatttAACGAAAAGCCGAATACAGCACAACCCAGAGACGCGCGTTAGCTCTAAACCCCCACCACAGAACATCAGACGTAATGCGGTATTATTTACGACTTCACGCCGTAACAGCGCACGTACCGTTCTTACTGCAATCACACGTCCagctgatgtctgtgtgtgaaacagCTAATAGCTGAGTGCTGACTTGTGCACTAAAACTACAGCGATGTTGAATcgtggattctgattggtcagaaggaagGTGTTGTCACCCTTTCCAAAATGGCGGATGAGTTGATGAACTGTGTAGCTAGCAACACCGGCTAATTCATCTGTATAAAGCCCTACTAAAGCATCAAGGACTGCCACTTAACTTACACACGAGACAGCTGTGCAggactggagtgtgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgagagtgtgagtgtgtgtgtgagtgtgtgtgtg
>TU325610
CACAGCCTCGCACATCACTGCCTCAAATTCTGTCCTGACTGCACAAACGCTCCACTAATCacatcatcaaacacacacgAGCGAAAGATGAAACGCACATCGGAACACCGTGAACAACAGGATGTAATTTAATGATCTGAGACAATCCAGATGAGGAACAGCTGCTCTGCTTCTGCACAagcaagagacaaagagaaatttAACGAAAAGCCAATACAGCACAACCCAGAGACGCTAAGTTAGCTCTAAACCCCCACCACAGAACATCAGACGTAATGCGGTATTATTTACGACTTCACGCCGTAACAGCGCACGTACCGTTCTTACTGCAAACACACGTCCagctgatgtctgtgtgtgaaacagCTAATAGCTGAGTGCTGACTTGTGCACTAAAACTACAGCGATGTTGAATcgtggattctgattggtcagaaggaagGTGTTGTCACCCTTTCCAAAATGGCGGATGAGTTGATGAACTGTGTAGCTAGCAACACCGGCTAATTCATCTGTATAAAGCCCTACTAAAGCATCAAGGACTGCCACTTAACTTACACACGAGACAGCTGTGCAggactggagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg

Function

GO: NA

KEGG:

id description
ko05322 Systemic lupus erythematosus

RNA

RNA id representative length rna type GC content exon number start site end site
TU325607 True 926 lncRNA 0.46 4 24567980 24617704
TU325610 False 663 lncRNA 0.47 2 24564642 24606916

Neighbor

gene id symbol gene type direction distance location
sgtb sgtb,LOC107558703,LOC107667268,LOC107548671,LOC107705058 coding downstream 55082 24500862 ~ 24509560 (-)
trim23 trim23,LOC107658681 coding downstream 87566 24465097 ~ 24477076 (-)
adamts6 adamts6,LOC107685101,LOC107713302,LOC107744255 coding downstream 109687 24378185 ~ 24454955 (-)
srek1ip1 NA coding downstream 254817 24306452 ~ 24309825 (-)
lin54 lin54,LOC107744261 coding downstream 290389 24259708 ~ 24274253 (-)
smc5 smc5,LOC107726549,LOC107734934 coding upstream 41104 24658808 ~ 24697852 (-)
mamdc2b LOC108277069 coding upstream 81087 24698791 ~ 24718235 (-)
tjp2a NA coding upstream 115844 24733548 ~ 24749451 (-)
pip5k1ba pip5k1b,LOC108428883,LOC107726562,LOC107705047,LOC107667273 coding upstream 143512 24761216 ~ 24777827 (-)
actr1 actr1,acty,LOC106585571,LOC105889177,LOC106563059,LOC107602067 coding upstream 175850 24793554 ~ 24797730 (-)
G274804 NA non-coding downstream 17490 24546200 ~ 24547152 (-)
G274771 NA non-coding downstream 72528 24491466 ~ 24492114 (-)
G274489 NA non-coding downstream 317085 24245196 ~ 24247557 (-)
LOC113543934 NA non-coding downstream 346964 24216715 ~ 24217678 (-)
LOC117599329 NA non-coding downstream 438435 24125158 ~ 24126207 (-)
G274833 NA non-coding upstream 19196 24636900 ~ 24637430 (-)
G274837 NA non-coding upstream 76869 24694573 ~ 24696111 (-)
G274841 NA non-coding upstream 101227 24718931 ~ 24719131 (-)
G274856 NA non-coding upstream 131941 24749645 ~ 24749854 (-)
G274857 NA non-coding upstream 137476 24755180 ~ 24755382 (-)
LOC113544170 plac8 other downstream 263610 24297476 ~ 24301032 (-)
inip inip,LOC107571239,LOC107658659,LOC107558675 other downstream 311330 24251548 ~ 24253312 (-)
nrarpa nrarp,nrarpa other downstream 701374 23859305 ~ 23863268 (-)
G274342 slc27a4 other downstream 762358 23798359 ~ 23802284 (-)
LOC113544130 rusc2 other downstream 3357472 21189969 ~ 21207170 (-)

Expression


Co-expression Network