G274853


Basic Information

Item Value
gene id G274853
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 24799457 ~ 24803481 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU325666
GTGTCTCGCGCGCAGTTCGGTTGACACGCAGCACTGCTCGGCGGGTGTGTGCTGAGGCGCGCGCTGATTTTACATGAAAAcagtttttataaaataaaataaaactcagaaacacacacacgcgcgcgcgctgcAGAGCCGATATGGAGTCGTATGATATTATAGCCAACCAGCCGGTGGTCATCGATAATGGTTCAGGTGTGATTAAAGCGGGGTTTGCTGGAGATCAGATTCCTAAATACTGCTTTCCTAATTAGTAAGTGATGCATTTACATCATCAGTGTAGCTTCTGACTtcacacaccttcatcatcatcatcatcatcattactgttactattattatcaattattattattattatcaattattatggttaataacagtaatattactattaataataacatgtgcagtgatgatgtcattatacttttattccttttatataaaaatgtcacagaaatttaatcacattatttacatttccacCACGgcgctgctgaatcctgcactctgattggtcagaaggtgttgattagttttctataacagcaggttatagacagtagcgcaggtttatattaatgcgctcgctctgatacgttatcgtttctatagtaacagctcattcacagggacgtgtacagcgacgctccactgataataaacagattaataattgTGTGTAAGCGTTTACATGGTGacgtttctgtaaggagaaacgtgtttatgtaacatgtatggaaggagtctccagtgtcagaggtgaagctgtaactgtaagttttccgacgtcttcaggacagaggagtttacgcttctttgcggtttctcactgacatgcggaacaagctgcggtTATTATTttagagaataaagaggctggtgagggaacgagtgtttatagctgctataacgtaagtgacaacaggaacgaactcgtttcactgacattaatgtaactataaatggataaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU325666 True 980 lncRNA 0.39 2 24799457 24803481

Neighbor

gene id symbol gene type direction distance location
actr1 actr1,acty,LOC106585571,LOC105889177,LOC106563059,LOC107602067 coding downstream 1727 24793554 ~ 24797730 (-)
pip5k1ba pip5k1b,LOC108428883,LOC107726562,LOC107705047,LOC107667273 coding downstream 21630 24761216 ~ 24777827 (-)
tjp2a NA coding downstream 50006 24733548 ~ 24749451 (-)
mamdc2b LOC108277069 coding downstream 81222 24698791 ~ 24718235 (-)
smc5 smc5,LOC107726549,LOC107734934 coding downstream 101605 24658808 ~ 24697852 (-)
zgc:86599 zgc:86599,LOC108276884,LOC107718706,LOC107558099,LOC107758606,LOC107602047,LOC107689940 coding upstream 2941 24806422 ~ 24808492 (-)
LOC113525332 LOC108276880 coding upstream 7322 24810803 ~ 24844734 (-)
LOC117599334 NA coding upstream 68569 24872050 ~ 24873662 (-)
G274859 NA non-coding downstream 17782 24780961 ~ 24781675 (-)
G274858 NA non-coding downstream 19071 24780119 ~ 24780386 (-)
G274857 NA non-coding downstream 44075 24755180 ~ 24755382 (-)
G274856 NA non-coding downstream 49603 24749645 ~ 24749854 (-)
G274841 NA non-coding downstream 80326 24718931 ~ 24719131 (-)
LOC113544170 plac8 other downstream 498425 24297476 ~ 24301032 (-)
inip inip,LOC107571239,LOC107658659,LOC107558675 other downstream 546145 24251548 ~ 24253312 (-)
nrarpa nrarp,nrarpa other downstream 936189 23859305 ~ 23863268 (-)
G274342 slc27a4 other downstream 997173 23798359 ~ 23802284 (-)
LOC113544130 rusc2 other downstream 3592287 21189969 ~ 21207170 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_002425 actr1 coding NC_007121.7 CM002894.2 42521943 ~ 42540839 (+)
grasscarp (Ctenopharyngodon idella) CI01000158_00878419_00882435 ACTY, ACTR1, ACTR1A, ACTR1A.L, ACTR1B coding CI01000158 null 878108 ~ 882435 (+)