tlx3b (LOC108276618)


Basic Information

Item Value
gene id tlx3b
gene name LOC108276618
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 1450158 ~ 1461224 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026910298.2
GctgcatcaaaaaaaaaaaaagaaaaaaaagttaacaggAATTTAACACTCAGTAGCGTTAGTCCTCTGAAAGTGGAATATAAGTCTCCTGAAGGGTGTTCGGTCAGGTTTGTGGAAGGAGAGGATGGACCGAGCGTCAAGCTCCAGCCCCACGGGTCAGACACCTCAGCCTGGCCCACACGAACCCATCAGCTTCGGCATCGATCAGATCCTCAGCGGCGGAGAGCCGGAGAGCCAaaaacgacaacaacaacaacaacaacagcaacaacaacaacagaactCGACACAGAACAGTCCGGACAGCGCGCACGGTCACCGAGCGACCAGCCCGAGTCCCTACCCTGCGCTCTCGGGCGCTTTTCACGGTCTGGCGGCTCCGTATGATGAATCCGGTGCGTACGGGCCGAACTTCGCTCTGGCGCCCGGCGGTGTGATCAGAGTCCCGGCGCACAGACCGCTCACCGCCGCCGTGCCCCCCACCGTCCCCGCGCTCAGCGGCATCGGCTTCCCCTGGATGGAGAGCAGCCAGCGCTTCGCCAAAGACCGCTTTGCAGCGGCCCTGACGCCCTTCACGGTGGTCGCGCGGCGGATCGGTCACCCGTACCAGAACCGGACGCCGCCCAAGCGGAAGAAGCCGCGCACGTCGTTCTCGCGCGCGCAGATCTGCGAGCTGGAGAAGCGCTTCCACCGGCAGAAGTATCTGGCCAGCGCCGAGCGCGCGGCTCTAGCCAAGACCCTGAAGATGACCGACGCGCAGGTCAAAACGTGGTTCCAGAACCGGAGGACCAAATggagACGGCAGACGGCGGAGGAGCGCGAGGCCGAGCGACAGCAGGCCAACCGTCTGATGATGCAGCTTCAGCACGACGCCTTCCACAAGTCTCTGAGCGAGCCGCTGCCGGCCGACCCGCTGTGCATGCACAACTCGTCCCTGTTCGCCCTGCACAACCTGCAGCCGTGGGCCAGCGAGGAGGGCGCCAAGCTCACCGCGCTGGCGTGAGACCCTCAGTACAAACACCCTGTCTTACCCCATCGCCCCCCTCCCAATCACCCCTAATCACCCCCATCACCCCCCCACGCC

Function

NR:

description
T-cell leukemia homeobox protein 3

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K15607 TLX3, HOX11L2; T-cell leukemia homeobox protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026910298.2 True 1084 mRNA 0.62 3 1450158 1461224

Neighbor

gene id symbol gene type direction distance location
LOC113524161 NA coding upstream 26693 1420371 ~ 1423465 (+)
cldn7b cldn7b,LOC108277307,LOC108444573 coding upstream 41324 1401549 ~ 1408834 (+)
fgf11b fgf11b,LOC103026543,LOC108443340,LOC107677987,LOC103363034 coding upstream 62758 1360710 ~ 1387400 (+)
pcolcea LOC108277346 coding upstream 321906 1119530 ~ 1128252 (+)
trnal-aag_10 NA coding upstream 350705 1099372 ~ 1099453 (+)
LOC113524165 LOC108277141 coding downstream 51340 1512564 ~ 1523146 (+)
LOC113524200 NA coding downstream 91044 1552268 ~ 1553689 (+)
fgf18b LOC108276546,LOC108437818,LOC103034963,LOC107742373,LOC107687415,LOC107552074 coding downstream 351375 1812599 ~ 1826322 (+)
avd LOC108277130 coding downstream 409435 1870659 ~ 1873142 (+)
pcdh1a LOC108276538,LOC108437809,LOC107678039,LOC107708655,LOC107720713,LOC107564544 coding downstream 520929 1982153 ~ 2053236 (+)
G261585 NA non-coding upstream 116172 1333782 ~ 1333986 (+)
G261544 NA non-coding upstream 186018 1263307 ~ 1264140 (+)
G261534 NA non-coding upstream 201477 1241824 ~ 1248681 (+)
G261536 NA non-coding upstream 203547 1245800 ~ 1246611 (+)
G261510 NA non-coding upstream 235662 1203000 ~ 1214496 (+)
G261634 LOC108276785 non-coding downstream 135538 1596762 ~ 1610711 (+)
G261638 LOC108276785 non-coding downstream 139247 1600471 ~ 1615601 (+)
G261642 LOC108276791,LOC108276664,LOC108276785,LOC108276794,LOC108276798,LOC108437803 non-coding downstream 166462 1627686 ~ 1678077 (+)
G261644 LOC108276798,LOC108276785,LOC108276794,LOC108276793,LOC108437803,LOC108416544 non-coding downstream 173387 1634611 ~ 1644162 (+)
G261643 LOC108276792,LOC108276799,LOC108276796,LOC108437803,LOC107688304,LOC105905981 non-coding downstream 220995 1682219 ~ 1704174 (+)
ponzr2 LOC108277330 other upstream 30669 1411986 ~ 1419489 (+)
G261503 NA other upstream 213026 1205991 ~ 1237132 (+)
vamp2 mpp1,vamp2,LOC106603197,LOC106563390,LOC106523110,LOC107386619,LOC107554313,LOC107742350 other upstream 337880 1101789 ~ 1112278 (+)
G261178 NA other upstream 722433 725827 ~ 727725 (+)
trim37 trim37,LOC107691657 other upstream 793949 603726 ~ 656209 (+)
rps25 rps25,LOC107583381,LOC107565279,LOC108433270,LOC107758587,LOC107679519 other downstream 1283172 2744396 ~ 2747317 (+)
pcp4a NA other downstream 1334267 2795491 ~ 2817263 (+)
nrip1b LOC108277259 other downstream 1654945 3116169 ~ 3141753 (+)
msi2a msi2b,LOC108276910,LOC108435815,LOC108425902 other downstream 1792092 3253316 ~ 3576137 (+)
triap1 triap1,LOC106568193 other downstream 3616629 5077853 ~ 5080643 (+)

Expression


Co-expression Network