cldn7b (cldn7b,LOC108277307,LOC108444573)


Basic Information

Item Value
gene id cldn7b
gene name cldn7b,LOC108277307,LOC108444573
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 1401549 ~ 1408834 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026910307.2
TCCCGCCGCCTCTCCTGCAGCTCTTCATCATCAAGGTGCGGTTCCTCCGGCAGGTGCTTCACTCACTCCCAGCTCTCAGAGGACTTCACCGCGGCCTAGCTCTCCTGGAGGAAACttttaaaaggattttaaaGGAAGATTACTTTTAAATAGTTTTGAAGACTATTTTTAAGGCGATTTACACTTTTTAAGGACAAACcaggcaactttttttttttaaaaaaaaaagaagaactaaAAGAAGGAGATGGCGAATAAAGGGATGCAGCTGCTGGGGTTTTTTCTGGCTTTGCTGGGGCTCGTTGGCCTCATAGCCGGCACCATCATGCCCCAGTGGCAGATGTCTGCCTACGTGGGAGACAACATCATCACCGCCGTGGCCATGTACCAGGGCCTGTGGATGTCCTGCGCCTTCCAGAGCACCGGGCAGATGCAGTGCAAAGTCTACGACTCCATGCTGCAGCTCAACAgtgctcTCCAGGCCACTCGTGCTCTGATGGTCATCAGTATCATCCTGACCGTGATGGGACTGGGCGTGGCCTCCATGGGCATGAAGTGCACCAACTGTGGCGGTGATGACAAAGTGAAGAAATCTCGCATCGCCATGACCGGAGGAATCATCCTCCTGCTGGGAGctcTGTGTTCCATCATCGCCTGCTCATATTTCTCCTATCAGATTATCCGGGATTTCTACAGTCCCTTCACTCCGGTCAACACAAAGTATGAATTCGGCAGTGCCATTTTCGTCGCCTGGGCCGGAACGTTCCTCACTGTTTTCGGCGGCGGCTTGCTGGCTGCGTCCTGCTCCAAGCGCCAGACGTCCAGCCCGAAATATCCAAAGTCCCGACCCCCAAGCAGCTCCAAGGAGTACGTCTGAGTGCCAGGCCCACGTCCGCTTAGTACCAAATCAATAACGGCAGCAAGCTGGTGGAGGTTTTCCTGTGCGGCTGATCTGAGAGCAGTTAGAAGTTTATTTAGCTTAAAGCAAATGTTTCTGAGATCAGCACATCAGGGCGACGTCTACGCCTGGCCTGCAGCAACGCATTATGTTTTCAGCTGTACTCATTTCTTCCATTGTTAACAGTGCCTtttgtcttgtatttttttttttgctgttgttgttataatGAAAATTTGTATTCATACGAAATCCCACCTGTAAAGCCATGCTGTTTTGCAGAAGGATGTTTTGAGACTGAGTAGTTTGTCTCTGAAGTGTAGAGCATAACGCACTCAGGGATCAGTGTATAATCTCTATTTTGTAGTTAAAAACATTAAACGCAGTGGGGAAAAGAATGTCCTCCATCTTTTCCCCTGTTTTATCTTTAGGCCCAAATACAGAACGCTGAATggtagcatttatttttaaaaatcaaacacgGTTTATAAAGAGTTCCAACACCAACAATATCACGTACGTTATACCTCCATCTTGTTTCATTACCTCCCTGTTTGAAAAGTGAAGTTATCGTTCGCCAAGCATCACTTTTCCCACCTTCCACGATCAACGATCTGTTTATCGAGCTTTGCTGTTGATCCTGCTGATCTCTCGACTCGCAAAAGTAAATATTAACCTTTATTTCATAAGCCGCGCCCTCTCGTTCACCGCTTCTACCACGCATTCCTGCCATAATCTCCTGCCCAAAAATGTCTTCTTTTCAACCTCAGATAAAGCTTTGTGTTTGCAGTttcctttctttaaaaaaaaaaaaaa

Function

symbol description
cldn7b Predicted to enable structural molecule activity. Acts upstream of or within several processes, including adherens junction organization; inner ear development; and sensory perception of sound. Predicted to be located in cell junction and membrane. Predicted to be integral component of membrane. Predicted to be active in bicellular tight junction and plasma membrane. Is expressed in several structures, including EVL; digestive system; integument; pleuroperitoneal region; and sensory system. Human ortholog(s) of this gene implicated in Crohn's disease and atopic dermatitis. Orthologous to several human genes including CLDN7 (claudin 7).

NR:

description
PREDICTED: claudin-7-B-like isoform X1

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K06087 CLDN; claudin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026910307.2 True 1714 mRNA 0.46 4 1401549 1408834

Neighbor

gene id symbol gene type direction distance location
fgf11b fgf11b,LOC103026543,LOC108443340,LOC107677987,LOC103363034 coding upstream 14149 1360710 ~ 1387400 (+)
pcolcea LOC108277346 coding upstream 273297 1119530 ~ 1128252 (+)
trnal-aag_10 NA coding upstream 302096 1099372 ~ 1099453 (+)
trnal-uag_7 NA coding upstream 306617 1094851 ~ 1094932 (+)
and3 LOC108277318 coding upstream 307216 1092079 ~ 1094333 (+)
LOC113524161 NA coding downstream 11537 1420371 ~ 1423465 (+)
tlx3b LOC108276618 coding downstream 41324 1450158 ~ 1461224 (+)
LOC113524165 LOC108277141 coding downstream 103730 1512564 ~ 1523146 (+)
LOC113524200 NA coding downstream 143434 1552268 ~ 1553689 (+)
fgf18b LOC108276546,LOC108437818,LOC103034963,LOC107742373,LOC107687415,LOC107552074 coding downstream 403765 1812599 ~ 1826322 (+)
G261585 NA non-coding upstream 67563 1333782 ~ 1333986 (+)
G261544 NA non-coding upstream 137409 1263307 ~ 1264140 (+)
G261534 NA non-coding upstream 152868 1241824 ~ 1248681 (+)
G261536 NA non-coding upstream 154938 1245800 ~ 1246611 (+)
G261510 NA non-coding upstream 187053 1203000 ~ 1214496 (+)
LOC113524197 npm1a,LOC108277343,LOC108444574,LOC107676031 non-coding downstream 19316 1428150 ~ 1510087 (+)
G261634 LOC108276785 non-coding downstream 187928 1596762 ~ 1610711 (+)
G261638 LOC108276785 non-coding downstream 191637 1600471 ~ 1615601 (+)
G261642 LOC108276791,LOC108276664,LOC108276785,LOC108276794,LOC108276798,LOC108437803 non-coding downstream 218852 1627686 ~ 1678077 (+)
G261644 LOC108276798,LOC108276785,LOC108276794,LOC108276793,LOC108437803,LOC108416544 non-coding downstream 225777 1634611 ~ 1644162 (+)
G261503 NA other upstream 164417 1205991 ~ 1237132 (+)
vamp2 mpp1,vamp2,LOC106603197,LOC106563390,LOC106523110,LOC107386619,LOC107554313,LOC107742350 other upstream 289271 1101789 ~ 1112278 (+)
G261178 NA other upstream 673824 725827 ~ 727725 (+)
trim37 trim37,LOC107691657 other upstream 745340 603726 ~ 656209 (+)
bcl7ba bcl7b other upstream 832366 507279 ~ 569183 (+)
ponzr2 LOC108277330 other downstream 3152 1411986 ~ 1419489 (+)
rps25 rps25,LOC107583381,LOC107565279,LOC108433270,LOC107758587,LOC107679519 other downstream 1335562 2744396 ~ 2747317 (+)
pcp4a NA other downstream 1386657 2795491 ~ 2817263 (+)
nrip1b LOC108277259 other downstream 1707335 3116169 ~ 3141753 (+)
msi2a msi2b,LOC108276910,LOC108435815,LOC108425902 other downstream 1844482 3253316 ~ 3576137 (+)

Expression


Co-expression Network