LOC113524161


Basic Information

Item Value
gene id LOC113524161
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 1420371 ~ 1423465 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026910312.2
CCATTTCATGTGTAATGAGGAAGAGAACACAGCATTCGACTAACCCAGAGAACCTGAGCTGAGCATCATGGCCGCCTCAGCTGTAGTgatccagcagcagcagccgaTGGTGGTGCCGAGGGTCACGGCCTGGACTTCAGGACTGTGCCACTGCTGCCTGGACATGAACTCATGCTGTTTTGCTTTCTGGTGTTTTCCCTGCTTCATGTGCAGCACCTCGCGTAAGTTCGGCGAGAGTTTGTGCCTCCCTCTCGTGGATCTGTTTGGCCCCGCGATCGTGGCGGCTACCGGCGTCGGGGTCTGTATTCCTCCCGTCACTCTGTCCATGAGGGTGGCCTTACGGTACAAATACCAAATCCCGggcaGTCTGTGTGAAGACATCCTGATCTCCTGTTTCTGCGTCTGTTGCTCGTGGTGTCAGATGCACCGGGAGATAAAGCACCGTAAACAGACAGCGGCGGTGATCAGCGCTCAGCCCGTGGCCTTCAGCACCATCACCTCCACCGTGCCTATAGTAtaacacatgacacacactgaGGAAATCACCGCTCAGCTTCCTCCTGATCTTCTGCCTCAGCTTTTACTAAACAAGCTGTACAGCTACGTAGTCATGTCTTTCAGTCAGTCTTTCCATTTTATAGCAACACAACCAAGTTTAAAAATCCAAATCTTCTCTTCATCTCAGTCATGATCAGTGAACAAACTCTGAGCTCAGGTTCCTTCTGATCTCACACCTAATGTACCTAATGTACCTAATGTACCTAATGTCACCTTTCTGCTTTAgagttgttgctgtttttttttttaatttgtcatttaagAAGATTTTTAGTGTTTACTTCAAAATGGTTCACTTTAACCTGAACAGAACAGTCAAAATTAGGATAATAAAGTGAGTCACGAAAAGAACacaattttaacacatttaaaaatatatatatatatatatcagtctaataaaagaaagtggaaaaa

Function

GO:

id name namespace
GO:0016070 RNA metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026910312.2 True 975 mRNA 0.46 4 1420371 1423465

Neighbor

gene id symbol gene type direction distance location
cldn7b cldn7b,LOC108277307,LOC108444573 coding upstream 11537 1401549 ~ 1408834 (+)
fgf11b fgf11b,LOC103026543,LOC108443340,LOC107677987,LOC103363034 coding upstream 32971 1360710 ~ 1387400 (+)
pcolcea LOC108277346 coding upstream 292119 1119530 ~ 1128252 (+)
trnal-aag_10 NA coding upstream 320918 1099372 ~ 1099453 (+)
trnal-uag_7 NA coding upstream 325439 1094851 ~ 1094932 (+)
tlx3b LOC108276618 coding downstream 26693 1450158 ~ 1461224 (+)
LOC113524165 LOC108277141 coding downstream 89099 1512564 ~ 1523146 (+)
LOC113524200 NA coding downstream 128803 1552268 ~ 1553689 (+)
fgf18b LOC108276546,LOC108437818,LOC103034963,LOC107742373,LOC107687415,LOC107552074 coding downstream 389134 1812599 ~ 1826322 (+)
avd LOC108277130 coding downstream 447194 1870659 ~ 1873142 (+)
G261585 NA non-coding upstream 86385 1333782 ~ 1333986 (+)
G261544 NA non-coding upstream 156231 1263307 ~ 1264140 (+)
G261534 NA non-coding upstream 171690 1241824 ~ 1248681 (+)
G261536 NA non-coding upstream 173760 1245800 ~ 1246611 (+)
G261510 NA non-coding upstream 205875 1203000 ~ 1214496 (+)
LOC113524197 npm1a,LOC108277343,LOC108444574,LOC107676031 non-coding downstream 4685 1428150 ~ 1510087 (+)
G261634 LOC108276785 non-coding downstream 173297 1596762 ~ 1610711 (+)
G261638 LOC108276785 non-coding downstream 177006 1600471 ~ 1615601 (+)
G261642 LOC108276791,LOC108276664,LOC108276785,LOC108276794,LOC108276798,LOC108437803 non-coding downstream 204221 1627686 ~ 1678077 (+)
G261644 LOC108276798,LOC108276785,LOC108276794,LOC108276793,LOC108437803,LOC108416544 non-coding downstream 211146 1634611 ~ 1644162 (+)
ponzr2 LOC108277330 other upstream 882 1411986 ~ 1419489 (+)
G261503 NA other upstream 183239 1205991 ~ 1237132 (+)
vamp2 mpp1,vamp2,LOC106603197,LOC106563390,LOC106523110,LOC107386619,LOC107554313,LOC107742350 other upstream 308093 1101789 ~ 1112278 (+)
G261178 NA other upstream 692646 725827 ~ 727725 (+)
trim37 trim37,LOC107691657 other upstream 764162 603726 ~ 656209 (+)
rps25 rps25,LOC107583381,LOC107565279,LOC108433270,LOC107758587,LOC107679519 other downstream 1320931 2744396 ~ 2747317 (+)
pcp4a NA other downstream 1372026 2795491 ~ 2817263 (+)
nrip1b LOC108277259 other downstream 1692704 3116169 ~ 3141753 (+)
msi2a msi2b,LOC108276910,LOC108435815,LOC108425902 other downstream 1829851 3253316 ~ 3576137 (+)
triap1 triap1,LOC106568193 other downstream 3654388 5077853 ~ 5080643 (+)

Expression


Co-expression Network