kctd7 (kctd7,LOC106603469)


Basic Information

Item Value
gene id kctd7
gene name kctd7,LOC106603469
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 615830 ~ 621347 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026910326.2
tggcctgatGTGTCTGATGAGGCCGCAGCTGGAGCGTGATGTGAGGCAgaaactgtgtgtttctctttctctttctctttgtgtgtttatCTTTCCACGGTGACATTCCGGACTAAAccccgccacacacacacccacacacacacacccacacacacacacgtccggTTCCAGTCGGGTTCTTTAGTGTGCATGCAGCAGAATGGAGCAGGCGAGACGCCGAATGGAGACGCAGGACAGCTCTCCTTCAGCACCGCCAGCTGCTCGGCTGCTTTGCTGCCTGCtgcctcttcatcatcatcatcatcatcatcatcatcctcatcatcatcaacatcatcctcatcatcctcagcctcatcatcatcctcatcacgGCTGAGGAGGCTCACCCAGGAGGGCCGCGGAGTTCCTCCTCAGCCCACAGTCATGGTCGTGTTCTCGGCTGCGAGGGACAGCGAGCCAGCAGGAGATTCCGCCATGTCCAGGTCCGAGGAGGAGAAACGCAAAGCAGCCGTTTGCACTCCGAGCAGAAGCTTAGCCAAACCCCTGCGCACCTTGAACGCACCCCAGGAGTTTCCCGAGGTGATTCCTCTGAACGTAGGAGGGACGTACTTCACCACACGTCTGTCCACGCTGCGCCGGTACGAGGACACCATGCTGGCCGCCATGTTCAGCGGACGCCATCACATTCCCCGAGACGCTGAGGGACGATACTTCATCGACCGAGACGGAGCTTATTTTGGGGACATCCTGAACTTCCTGCGTGAGGGTGAGCTTCCTCAGAGGGACCGGGTTCGGGCCGTACACAGAGAGGCTCAGTATTACTCCATCGGGCCGCTGTTAGAGAGTCTGGAGGACAGACAGCCTCTGACCGGGGAGAAGGTTCGCCAGGCGTTCCTCGACCTCCTGCCTTATTAtaaagAGAATCTGGAGCGCATCGTGGAGATAGCGAAGCTGCGAGCCATGCAGAGGAAGGCTCGCTTCGCCAAGCTGAAGATCTGCGTGTATAAGGAGGAGATGCCGATCACGCCGTACGAGCGTCCGCTCTTCAACTCGCTGCGCTTCGAGCGCTCCGAGAGCGAGGCCAAGCTGTTCGAGCACCACTGCGAGGTGGACGTGTCGTTCGGGCCGTGGGAAGCCGTGGCCGACGTGTACGACCTGCTGCACTGCATCGTGAGCGACCTGGCCGAGCGCGGCATCACCGTCGACCAGCAGTGCATCGGAGTGTGTGACAAACACCTCATCAACCACTACTACTGCAAGAGGCCCATCTACGAGTTCAAGATCACCTGGTGGTGAAGGAACGGGTTCTGCTTCTGGTCAGAGAGCTTAGGACGGTGGTCCAGGTTCCTTCGGGAGATTGGAAGCGGGTCGCGTCTGTAGCACTAAACCTAAActatttactcatttaagaTCACATAGTGGTGAAGGACTGGTACTGAAACAGGTCCAGGTTCTTTTAGGAGCCTTCAGTTACTGTTGCAGGTCCGGGTTCCTCTAAGAGCTTGCATGATGGCAGCAAACCTGACGCTGACGCTAATGCTAACGATGTCGCTAATCCATCTGCGCTTAAGATCACTTAGTGAACtacatttatagtttatagaaCGAGAAGGTTACAGTTCAAACCTTCATCCAGATGCATTGAAGATCTCTTGTTGAAGTGTGTGAGGAATTCACGCAAGAACGTTCAGTTAGTCTGTATCACTCAATGCTAAATATTTATACTTATCAGAACGGATTCGGATCTTCAGAGAGCTTTAAGATCGCTTAATGATGAAGAGGACTTGAGGTTCTTTTAGGAGAACCTTCAGGATCAGGAACGTTAAAGATCATATCATTAACCACTTCCACTAGTCCACTGCTAAGTCCCCTCGGTGGTGAAGGACAGGTTGTAGTtattagaatgtgtgtgtgaggatctCGGGTGTGTGAGGATCTTGGGTGTGTGAGGATCTCGCAGGAAGGTTGGTGTCTTCAGCTTCGCttgttctggttctggttcttgTCAGGATCTTCTTCCCGAGCGGCGTTAGTCATGAGCAAGTGCTGGTTCTGTGGAAGCTGTTTAGTTTGTAAGCGCCGGTGTCATGTCCTCTGTGAGTGTTGTTCTGTCtcgctgcagtgtgtgtgtgtgtgtgtgtgtgtgtgtggaactctCGACTCGTCAACTGGAATCATGCTGCGTTCTTTGTGCTTTTCATCTCAACCTGTTGTCCAGATATTTGGACGAATGCAAGACCACATGCAGGCTGTTTCCTTATTTCATTGTAGGTGTTGTGAAGAATTCAGTCTTTCTGAAGCAGTGATAAAGAAACTCCATCTTCAGATAAGCTGCAGAAGTTTATTAATAACGTGTAGTTTCTCTCGCTCCGTGTGCAGCAGGCGACACTTTCTtcaggtgtgtgaggtgtaaCATGTTTCTGCTAAGTCTGCCTAACATTCATTTAACAATAAACCGtaagctgtagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttaagcaaCGCTGCACTGAACTGACTGTTAGTGTCTTTATTGTCACTGAGACACGTTCCTCTTCCCTCTGTAGCGCTCAGCTCTGATATTTCAGGCTAAAGGATCAGCTCAGCTGTAGCCGGATGATCTCGCTGTAACTAATCCACGtttttttggtgtattttttatttcagtgtgagGGCTGTGAGGCTGCTGAAGCTGCATGAGCTCTCAGGATAAGCGGCGGTTTTGTTGTCTGTTTAACTCGATGCAGTTTCCTCTGTAACTCTGCTGCACTTCAGTGTAAATGAACCGAACCTCATGTTTGTACTGCTTCATTGTGCTGATAATAAACTCTGTATATTTTGCCA

Function

symbol description
kctd7 Predicted to be involved in membrane hyperpolarization and positive regulation of transporter activity. Predicted to act upstream of or within protein homooligomerization. Predicted to be located in cytosol and membrane. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in progressive myoclonus epilepsy 3. Orthologous to human KCTD7 (potassium channel tetramerization domain containing 7).

NR:

description
BTB/POZ domain-containing protein KCTD7

GO:

id name namespace
GO:0051260 protein homooligomerization biological_process
GO:0005829 cytosol cellular_component
GO:0005886 plasma membrane cellular_component

KEGG:

id description
K21917 KCTD7_14; BTB/POZ domain-containing protein KCTD7/14

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026910326.2 True 2862 mRNA 0.51 4 615830 621347

Neighbor

gene id symbol gene type direction distance location
cux1a LOC108276869,LOC106568027 coding upstream 3280 576083 ~ 612550 (+)
tbl2 tbl2,LOC107734476,LOC107691705,LOC107686137,LOC107728824 coding upstream 108731 501222 ~ 507099 (+)
LOC113523717 c2cd2 coding upstream 139239 460262 ~ 476591 (+)
il2rga LOC108276805 coding upstream 263902 341671 ~ 351928 (+)
LOC113538163 LOC108276802 coding upstream 370412 226364 ~ 245418 (+)
rabgef1 rabgef1 coding downstream 2039 623386 ~ 636006 (+)
atg101 atg101,LOC107751375,LOC107686213,LOC107589731,LOC107691654,LOC107577413 coding downstream 94858 716205 ~ 719326 (+)
umodl1 umodl1 coding downstream 108671 730018 ~ 743991 (+)
mogat2 mogat2,LOC107751377,LOC107579037,LOC107691703 coding downstream 141730 763077 ~ 775278 (+)
dgat2 dgat2,LOC107746984,LOC107691652 coding downstream 160176 781523 ~ 794093 (+)
G261101 NA non-coding upstream 710 517324 ~ 615120 (+)
G261140 NA non-coding upstream 37063 434343 ~ 578767 (+)
G261106 NA non-coding upstream 192072 422871 ~ 423758 (+)
G261099 NA non-coding upstream 193790 418689 ~ 422040 (+)
G261090 NA non-coding upstream 288362 327262 ~ 327468 (+)
LOC117599335 ppm1e non-coding downstream 36058 657405 ~ 684364 (+)
G261173 NA non-coding downstream 84196 705543 ~ 706282 (+)
G261176 NA non-coding downstream 90077 711424 ~ 713068 (+)
G261190 NA non-coding downstream 149911 771258 ~ 773261 (+)
G261183 NA non-coding downstream 172853 794200 ~ 795370 (+)
bcl7ba bcl7b other upstream 46647 507279 ~ 569183 (+)
prdm15 prdm15,LOC107578663,LOC108413920,LOC106512200,LOC106511912,LOC107728867,LOC107686138 other upstream 115644 482388 ~ 500186 (+)
G261104 NA other upstream 135119 444767 ~ 480711 (+)
ska2 ska2,LOC108276801 other upstream 179532 379020 ~ 436298 (+)
LOC117599405 NA other upstream 303844 311476 ~ 311986 (+)
G261178 NA other downstream 104480 725827 ~ 727725 (+)
vamp2 mpp1,vamp2,LOC106603197,LOC106563390,LOC106523110,LOC107386619,LOC107554313,LOC107742350 other downstream 480442 1101789 ~ 1112278 (+)
G261503 NA other downstream 584644 1205991 ~ 1237132 (+)
ponzr2 LOC108277330 other downstream 790639 1411986 ~ 1419489 (+)
rps25 rps25,LOC107583381,LOC107565279,LOC108433270,LOC107758587,LOC107679519 other downstream 2123049 2744396 ~ 2747317 (+)

Expression


Co-expression Network