tmem88a (tmem88,LOC108276534,LOC106608829,LOC106525123)


Basic Information

Item Value
gene id tmem88a
gene name tmem88,LOC108276534,LOC106608829,LOC106525123
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 1128579 ~ 1134162 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026910339.2
AGGTTTGAAAACTGTATAtacgtcatttttttttgtcctattccACCACCCCTCTTCACTCTGCTGCTGAATCAGTTGTACCTCAGTGTCCAAACATCCTATCTACCCTGAGCAGGAGTGAACTCAAGCCCAAGAGGAGGAAAGGAGGATACCCAATTCAGAGGAAGGAAAGAGTGAGGCAGgaaaagagatagatagatagggagagagagagagaaagagagagagagagagaggaggaaggcAGGTTTTTCCATCAGAGATCCCTGTTTTTGACACTGACTTTGCTTGGGCACCAACAGCTACTAAGAAggattgaaataaaaaaaatcaggaccACGAAAAGAGCTAAGGACTTTCTCAACAATTTCAAAGACAGATCTGAAGAGATCTGCTCACCAACAGGAGGATTACAACCAACCACCTGGGAAAATATTTGGCAGATTTTGTGGAGGATACAAAGGCCCAAGGTTCTTTAAGTTCACCGTAAACTGTGCTCTTCTGAGCTCGCTGTCTCTGTGATTCAGGATGAGTTTGTCTCGTAACGGGACGCTGGAGAGGACGGCGTCTCAGCAGTTCGGCTCTGATGGAGATGACTCCGAGTCGACTCGTCTGCATCACACGAGCTCCATGTCATCGCCAGTTGTTGACCCCGCGACCCCAGCAGCAGTGGTTCCTCCTCCGTACTCATCCTCCAACGCTTCGGCCGAGCCGCTGGAACTCAGAGCCTCGCTGGACTGCTGGGCGTGCTCGGTTCTCGTCACGTTGCAGAACCTCATCATCGCCGCCGTGAATGTAGCACTCGCCGCCGTTATTTTCGGAATCATCCTCACTCCGGCGCTCACCATGGTCGTGTTCGGCTTCCTCTGCCATTCTAAGGTTCAGCCCCATGGTACGTCGGTTTATTGCTCGGACCTGCTCAACGACGCGTCCTGTGTGGCTCTGCTGGTCGTGGGCTTCTTGTTGTTGGTTCCTCTGCTGGTGTTGGCTCTAGCGGCGTACTGTAGATTGGCACGTCACCTGCAACTCGGCCTCTGCTTCATCCCTTACAGCCGCGCCGTCTATAAAAACCTTCCTGTGTCTCAGCACCCGGGGCTGAGGGGCTGCTGcagccagcagggggcagcgGAGAGAGACGCCAAAGCCAGCGTGTGGGTGTGAGGACGTACGGGACGCTCTGCAGAGTCTTGGGCTGAAACTGTGATGAAGAGTTAATAATCCAATgatctacttttttttattaatttgtataGTAATTACGCGCATTTTAAATCAAAGGCAGATGAATCCACTGgtttctgaactttttttttatcaaagaaATTTCAAAAttgcatggttttttttttcttgattttatttttgcattttaatttcgAGGACTGAACATCGCATCAAATGGCATTGCATGATTCTGATATGTTTAACATACTTTTGTGTcctgtcttgtgtttttttcaataAACTTAAAATCAGAAATTC

Function

symbol description
tmem88 Predicted to enable PDZ domain binding activity. Involved in negative regulation of canonical Wnt signaling pathway; protein localization to plasma membrane; and protein stabilization. Located in cytosol and plasma membrane.

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026910339.2 True 1482 mRNA 0.48 3 1128579 1134162

Neighbor

gene id symbol gene type direction distance location
LOC113524202 NA coding downstream 30270 1098177 ~ 1098309 (-)
trnas-gcu_6 NA coding downstream 30700 1097798 ~ 1097879 (-)
trnat-agu_11 NA coding downstream 32905 1095601 ~ 1095674 (-)
ap4m1 ap4m1,LOC107702797,LOC107720677,LOC107554303,LOC107742404 coding downstream 38048 1081869 ~ 1090531 (-)
foxo1b LOC108277356 coding downstream 47290 1052951 ~ 1081289 (-)
kdm6bb kdm6b,LOC108277160,LOC105902372 coding upstream 4717 1138879 ~ 1159183 (-)
efnb3a LOC108277042 coding upstream 69670 1203832 ~ 1230875 (-)
gigyf1b gigyf1,LOC108277040,LOC108443343 coding upstream 101379 1235541 ~ 1260050 (-)
LOC117599374 NA coding upstream 202498 1336660 ~ 1337281 (-)
npm1a npm1a,LOC108277343,LOC108444574,LOC107676031 coding upstream 331394 1465556 ~ 1471706 (-)
G261676 NA non-coding downstream 74556 969913 ~ 1054023 (-)
G261686 NA non-coding downstream 130278 997641 ~ 998301 (-)
G261355 NA non-coding downstream 252802 657927 ~ 875777 (-)
LOC113524153 NA non-coding upstream 98201 1232363 ~ 1235521 (-)
G261748 NA non-coding upstream 189018 1323180 ~ 1323407 (-)
G261753 NA non-coding upstream 194409 1328571 ~ 1328776 (-)
G261758 NA non-coding upstream 200578 1334740 ~ 1334940 (-)
G261759 NA non-coding upstream 225977 1360139 ~ 1360361 (-)
lhfpl6 lhfp,LOC103046216,LOC107686123,LOC107691645,LOC107577306,LOC107751385,LOC107746987,LOC107589696,LOC108442104 other downstream 16186 1015807 ~ 1112393 (-)
LOC117599327 NA other downstream 96044 981406 ~ 1032535 (-)
si:ch211-266i6.3 LOC108276750 other downstream 114290 1006914 ~ 1014289 (-)
fhl1b fhl1b,LOC108444522,LOC107718794,LOC107701105,LOC107693928,LOC107548848 other downstream 812254 301010 ~ 316325 (-)
nlgn2b nlgn2,LOC108277041,LOC108443341,LOC107678031,LOC107720555,LOC107554306 other upstream 131290 1265452 ~ 1410939 (-)
G261868 LOC108276666,LOC108277182,LOC108277183,LOC108276665,LOC108277185 other upstream 641399 1775561 ~ 1780407 (-)
si:ch73-1a9.3 NA other upstream 1545513 2679675 ~ 2760185 (-)
LOC113544801 LOC108276863,LOC108433269 other upstream 1578280 2712442 ~ 2724473 (-)
LOC113544717 LOC108276916,LOC108276915 other upstream 1831493 2965655 ~ 2968182 (-)

Expression


Co-expression Network