LOC113524200


Basic Information

Item Value
gene id LOC113524200
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 1552268 ~ 1553689 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026910354.2
ATGGTGGGATGTGCTTTACCAGAAGAGAGTGAAGCAACGCTGTAATGATTAACTCCTCTAATTCCTATAAAAGGAAAGAATTCAGCTTTGTGTTTCAGAAACATTTTGACAATGAAGAGCACCGTTGCAGTTTTGgctctgcttgtgtgtgtgacttgGGCTGCACCTGTTCAAGAGGATGAAGCTCCTACAAAAACTGCTGTAGAGGTTTCTGAAAGTAAACAGCAGACAGACCAACTCACTGATGGCTTACCAAAGGTGGCTTTCTCAGTTGGATCAGGATATGAAGGAACTTATGGACCCTTCAACACGGCAGTCACCTTGGTCTTCAAAAAAGTGATAACAAATGTTGGAAACTTGTACAGTCCACACACTGGTATTTTCAAAGCACCAGTGAGAGGCGTCTATCACTTCTCAGCTTCTGTCTTTGGAAACACCCAAACCTTAGTTGAAGTATATTTAATGAAGAATGGGCAGCGTGTTTTCGGAATGTCAGAGTCTCCTAAAGGATCCAACATGTCTATGAGCCGAGCCATCAATCTGTTACTGGAACAGGGCGATGAGGTTTATTTAAATCTTAGAGCCCACACTCAGATGTATGACGATGGCCAAACATACAACACTTTCAGTGGCTTTCTCCTTTTCCCCATGTAACTATATACAGAGAGAATACAACACCAGTACCCACCCTTGTCGCATAACTGATATCACATTGTTTACCTTGATTTTCCTGCAGGGTTCCTGTCAACTTGTAACTTTCGTATTTTGCTTCACTGTGGTTTTGGGGCTGTATTCTAATGAGAAAAGAATATTGGTTAACACAAGAATAAAATACATGATTTCTGTC

Function

GO: NA

KEGG:

id description
ko04974 Protein digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026910354.2 True 847 mRNA 0.41 3 1552268 1553689

Neighbor

gene id symbol gene type direction distance location
LOC113524165 LOC108277141 coding upstream 29122 1512564 ~ 1523146 (+)
tlx3b LOC108276618 coding upstream 91044 1450158 ~ 1461224 (+)
LOC113524161 NA coding upstream 128803 1420371 ~ 1423465 (+)
cldn7b cldn7b,LOC108277307,LOC108444573 coding upstream 143434 1401549 ~ 1408834 (+)
fgf11b fgf11b,LOC103026543,LOC108443340,LOC107677987,LOC103363034 coding upstream 164868 1360710 ~ 1387400 (+)
fgf18b LOC108276546,LOC108437818,LOC103034963,LOC107742373,LOC107687415,LOC107552074 coding downstream 258910 1812599 ~ 1826322 (+)
avd LOC108277130 coding downstream 316970 1870659 ~ 1873142 (+)
pcdh1a LOC108276538,LOC108437809,LOC107678039,LOC107708655,LOC107720713,LOC107564544 coding downstream 428464 1982153 ~ 2053236 (+)
LOC117599403 NA coding downstream 789972 2343661 ~ 2347385 (+)
smtlb sl,LOC108276625 coding downstream 1096965 2650654 ~ 2653366 (+)
LOC113524197 npm1a,LOC108277343,LOC108444574,LOC107676031 non-coding upstream 42181 1428150 ~ 1510087 (+)
G261585 NA non-coding upstream 218282 1333782 ~ 1333986 (+)
G261544 NA non-coding upstream 288128 1263307 ~ 1264140 (+)
G261534 NA non-coding upstream 303587 1241824 ~ 1248681 (+)
G261634 LOC108276785 non-coding downstream 43073 1596762 ~ 1610711 (+)
G261638 LOC108276785 non-coding downstream 46782 1600471 ~ 1615601 (+)
G261642 LOC108276791,LOC108276664,LOC108276785,LOC108276794,LOC108276798,LOC108437803 non-coding downstream 73997 1627686 ~ 1678077 (+)
G261644 LOC108276798,LOC108276785,LOC108276794,LOC108276793,LOC108437803,LOC108416544 non-coding downstream 80922 1634611 ~ 1644162 (+)
G261643 LOC108276792,LOC108276799,LOC108276796,LOC108437803,LOC107688304,LOC105905981 non-coding downstream 128530 1682219 ~ 1704174 (+)
ponzr2 LOC108277330 other upstream 132779 1411986 ~ 1419489 (+)
G261503 NA other upstream 315136 1205991 ~ 1237132 (+)
vamp2 mpp1,vamp2,LOC106603197,LOC106563390,LOC106523110,LOC107386619,LOC107554313,LOC107742350 other upstream 439990 1101789 ~ 1112278 (+)
G261178 NA other upstream 824543 725827 ~ 727725 (+)
trim37 trim37,LOC107691657 other upstream 896059 603726 ~ 656209 (+)
rps25 rps25,LOC107583381,LOC107565279,LOC108433270,LOC107758587,LOC107679519 other downstream 1190707 2744396 ~ 2747317 (+)
pcp4a NA other downstream 1241802 2795491 ~ 2817263 (+)
nrip1b LOC108277259 other downstream 1562480 3116169 ~ 3141753 (+)
msi2a msi2b,LOC108276910,LOC108435815,LOC108425902 other downstream 1699627 3253316 ~ 3576137 (+)
triap1 triap1,LOC106568193 other downstream 3524164 5077853 ~ 5080643 (+)

Expression


Co-expression Network