LOC113525332 (LOC108276880)


Basic Information

Item Value
gene id LOC113525332
gene name LOC108276880
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 24810803 ~ 24844734 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026911816.2
CCTTCCTACTAACCCACCACAGCTGATTCCCATTCACAATCAATGAACTCTCTACAAATTTCACACCAATACACACGATCTGTGTGAAGATTAAGACTTTATCAATGATGGCGGTGAATCTGAGTAAACACGGTGCAGAACTCTCAGATGCTTATAATGAAGTGGTGAACGGAAAAACTGACACTGACTGGGTTTTATTCACATATGAAGGAAACAGCTATGATATCCAAGTAGCAGCAAAAggagGTGGAGGTTTAGATGAGATGGTGCAGGAGCTCGACGTGGGTAAAGTGATGTACGCATTCTGCAGAGTGATTGATCCGAATTCCGGAGTGACAAAATTTATTCTCATTAACTGGactgGTGAAGGAGTGACCGGTATGAGGAGAGTTGTGTGTGCTAATCACTTCCACACCATGGCCAGTTTTTTAAGGGGAGCTCATGTGACAATTAAAGCGCATTCAGAAGACGATGTTGAGCCTGAACTCATCATGAATAAAGTCTGTCAGGCTGTAGGAGTGAATTACAGCTTACACACTGAATCAAATCAATTCAGCAACGCTGCAGCTTCACATCCTGTGgGTTCAGCATATCACAAAACCAGCGCATTAGAGGAAATTAAAGGAACTGAGAGGGAAAACTTCTGGGCTCAGATGGAGaaagaggaagaaactCGCCGTCagcaggagagaaagaaagcagaggagGAACAACAGagagtggagaaagagagaaaagaacaggaggagagagagatggccgAGAGAGAGCGacggcagagagagagagccaaacAGATCGATCAGCAGAGACTGTTTGAGAAGAGACAGGAAACCAAACATCAAAATCAGCAGCAACAGGAACCGGTGGAGCAAGAACTTCAGGCTGCTCAGTGGAAAGGAGTAAGAAGCTCCAGAACTGTTCAGGAAGCCAGAggttcaAAGTATTGTAAAACCAGTGCTTTAGAAGAAATTAATGGAACCGACAGGGAAAATTTCTGGGCTCAGTTGGAGaaagaggaagaaactCGCCGTCagcaggagagaaagaaagcagaggagGAACGACAGagagtggagaaagagagaaaagaacaggaggagagagagacggccGAGAGAGAGCGacggcagagagagagagccaaacAGATCGATCAGCAGAGGCTGCAGGAGAAGAAGCAGGAagctaaaaatataaatcaacaGAAATCGGTGGAGCAAGAACTTCAGGCTGCTCAGTGGAAAGGAATAAGAAGCTCCAGATCTGTTCAGGAAGCCAATgATGCAGCGGCCATCATTTCTCAGCGTGCCGTCAACCCCAGAGACATTTTCagtcaaaaagaaacaaacttcCTCACTAACAGAGTCTCTGAAACACAACCGGGCAAGAGCAGCACTAATGATATCGCTTATAATGAAGAGAAACAGCTGGAAGAAAACAGCTACGACACAGTTCCATCACAACACAGAGTCTATAATGAGgtGGAAGATGGCAGAACGTCTGCAGTTAAACAGTCGGCTGGTCTGCAGCAGAGTCTCTACGCTAAAGCGCTGTTTGATTATCAGGCGGCTGATGACACTGAGATCACCTTTGACCCTGGTGACATCATCACCGTTGTAGAGATGGCGGATGAAGGCTGGTGGCACGGTTACGGGCCTGATGGGCATTATGGGATGTTTCCCGCTAATTATGTGGAGCTCATTTAAATTgcagtttaatgtttaatctgtTGCTGAAATGTTCCTGACGGTTTGGTGGTTTTGCTGCAGTTACGCTGCAGACTGAGAAGCTTGTGCTGAGTTACACAGCAGGCAAACTGCTACATACATGTAATTAATATGTTCGTAAGATTACTGTTCAACTGGGTTCCTTTAAAAACTGTTTCTGagaacacaaacatttacaataaaCTGATAAAGTAC
>XM_026911817.2
tgtgtgtgtcagagagagagagagcgagtgagtgagtgagttttgAGGTGTTCCTCTGCTCTAAATGTTCCCAAACTGGTTTAGCATGATTTTCTAAACACAGGTTTGGCTTAAggagATTAAGACTTTATCAATGATGGCGGTGAATCTGAGTAAACACGGTGCAGAACTCTCAGATGCTTATAATGAAGTGGTGAACGGAAAAACTGACACTGACTGGGTTTTATTCACATATGAAGGAAACAGCTATGATATCCAAGTAGCAGCAAAAggagGTGGAGGTTTAGATGAGATGGTGCAGGAGCTCGACGTGGGTAAAGTGATGTACGCATTCTGCAGAGTGATTGATCCGAATTCCGGAGTGACAAAATTTATTCTCATTAACTGGactgGTGAAGGAGTGACCGGTATGAGGAGAGTTGTGTGTGCTAATCACTTCCACACCATGGCCAGTTTTTTAAGGGGAGCTCATGTGACAATTAAAGCGCATTCAGAAGACGATGTTGAGCCTGAACTCATCATGAATAAAGTCTGTCAGGCTGTAGGAGTGAATTACAGCTTACACACTGAATCAAATCAATTCAGCAACGCTGCAGCTTCACATCCTGTGgGTTCAGCATATCACAAAACCAGCGCATTAGAGGAAATTAAAGGAACTGAGAGGGAAAACTTCTGGGCTCAGATGGAGaaagaggaagaaactCGCCGTCagcaggagagaaagaaagcagaggagGAACAACAGagagtggagaaagagagaaaagaacaggaggagagagagatggccgAGAGAGAGCGacggcagagagagagagccaaacAGATCGATCAGCAGAGACTGTTTGAGAAGAGACAGGAAACCAAACATCAAAATCAGCAGCAACAGGAACCGGTGGAGCAAGAACTTCAGGCTGCTCAGTGGAAAGGAGTAAGAAGCTCCAGAACTGTTCAGGAAGCCAGAggttcaAAGTATTGTAAAACCAGTGCTTTAGAAGAAATTAATGGAACCGACAGGGAAAATTTCTGGGCTCAGTTGGAGaaagaggaagaaactCGCCGTCagcaggagagaaagaaagcagaggagGAACGACAGagagtggagaaagagagaaaagaacaggaggagagagagacggccGAGAGAGAGCGacggcagagagagagagccaaacAGATCGATCAGCAGAGGCTGCAGGAGAAGAAGCAGGAagctaaaaatataaatcaacaGAAATCGGTGGAGCAAGAACTTCAGGCTGCTCAGTGGAAAGGAATAAGAAGCTCCAGATCTGTTCAGGAAGCCAATgATGCAGCGGCCATCATTTCTCAGCGTGCCGTCAACCCCAGAGACATTTTCagtcaaaaagaaacaaacttcCTCACTAACAGAGTCTCTGAAACACAACCGGGCAAGAGCAGCACTAATGATATCGCTTATAATGAAGAGAAACAGCTGGAAGAAAACAGCTACGACACAGTTCCATCACAACACAGAGTCTATAATGAGgtGGAAGATGGCAGAACGTCTGCAGTTAAACAGTCGGCTGGTCTGCAGCAGAGTCTCTACGCTAAAGCGCTGTTTGATTATCAGGCGGCTGATGACACTGAGATCACCTTTGACCCTGGTGACATCATCACCGTTGTAGAGATGGCGGATGAAGGCTGGTGGCACGGTTACGGGCCTGATGGGCATTATGGGATGTTTCCCGCTAATTATGTGGAGCTCATTTAAATTgcagtttaatgtttaatctgtTGCTGAAATGTTCCTGACGGTTTGGTGGTTTTGCTGCAGTTACGCTGCAGACTGAGAAGCTTGTGCTGAGTTACACAGCAGGCAAACTGCTACATACATGTAATTAATATGTTCGTAAGATTACTGTTCAACTGGGTTCCTTTAAAAACTGTTTCTGagaacacaaacatttacaataaaCTGATAAAGTAC

Function

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0003779 actin binding molecular_function

KEGG:

id description
K20520 DBNL, ABP1; drebrin-like protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026911816.2 False 1925 mRNA 0.45 18 24810803 24844734
XM_026911817.2 True 1954 mRNA 0.45 18 24810803 24827597

Neighbor

gene id symbol gene type direction distance location
zgc:86599 zgc:86599,LOC108276884,LOC107718706,LOC107558099,LOC107758606,LOC107602047,LOC107689940 coding downstream 2311 24806422 ~ 24808492 (-)
actr1 actr1,acty,LOC106585571,LOC105889177,LOC106563059,LOC107602067 coding downstream 13073 24793554 ~ 24797730 (-)
pip5k1ba pip5k1b,LOC108428883,LOC107726562,LOC107705047,LOC107667273 coding downstream 32976 24761216 ~ 24777827 (-)
tjp2a NA coding downstream 61352 24733548 ~ 24749451 (-)
mamdc2b LOC108277069 coding downstream 92568 24698791 ~ 24718235 (-)
LOC117599334 NA coding upstream 27316 24872050 ~ 24873662 (-)
G274853 NA non-coding downstream 7322 24799457 ~ 24803481 (-)
G274859 NA non-coding downstream 29128 24780961 ~ 24781675 (-)
G274858 NA non-coding downstream 30417 24780119 ~ 24780386 (-)
G274857 NA non-coding downstream 55421 24755180 ~ 24755382 (-)
G274856 NA non-coding downstream 60949 24749645 ~ 24749854 (-)
LOC113544170 plac8 other downstream 509771 24297476 ~ 24301032 (-)
inip inip,LOC107571239,LOC107658659,LOC107558675 other downstream 557491 24251548 ~ 24253312 (-)
nrarpa nrarp,nrarpa other downstream 947535 23859305 ~ 23863268 (-)
G274342 slc27a4 other downstream 1008519 23798359 ~ 23802284 (-)
LOC113544130 rusc2 other downstream 3603633 21189969 ~ 21207170 (-)

Expression


Co-expression Network