apba1b (LOC108276879)


Basic Information

Item Value
gene id apba1b
gene name LOC108276879
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 24718729 ~ 24733547 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026911826.2
gagagagagagagagagagagagagagagagagaggggagtgTGTGATTAATGGATAGCTCtgctaatataaatataaaccagaTCCAGATTCACATCTGTCCAGCTGCATGGTACGTCCAGCTCGGCCTTCTTCCTTTACtttcaattcattttcagtttttaaacacTTCTTTTCTTTGCAGTGAAGAAGCTTGGAGACAGTCGAGAAGTGTGAACTAAGGAATGAGTTCTGTAGAATTCAGTTCTGTTTAATttaagtagtattttataatcactacatcatcttcatcactacATACACAGTCAGAAAGCTCCTTCTTCTTGCCTGTGGTCCGTTCACACACTCCTCAGAGCTCAGGGAGTCTGCGTGAGGAGGAAAGAGCTGGACTCCTGCAGCTCAGAGGAACAGCTCAGAGGAACAGCTCAGAGGAACAGTAACAATCTGTGCAGTTAAGACCTGAATCATGACTTCATACTGAAGAATCTGAAAATTATTCACAGCTTTAATCCAGATGCCTTCACCATGCAGACTGTCCTCCACTTCCTGCTCAGCTTCACTCCAGAGAAACGCAGCACCACTGTGACGTCAACAggcaaagtgcattatgggaactCAGCATCCGCTGTAGGCTGCACGGCTTGGACCTCAGCCtcctgcagtgcattgtgggatatttTACACTATAGCCTACTTTCAGAAATTATTTCTGAAACAGAAAAACTCCTTACCCAGTGAACTGTACAGCTAGAGAACAgggtgtggtttgggacatgaTGAAGATGACAGAGCTggactacattacccacaatcctaAAACCACTCGGTAAGCTATtctgttaccatggaaacgcTGGAACGCTGACTCCGGGTCTCCTGTAGAggttgctgttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcagggtgtgTCGGTGTGTCGCGGAGGATGCGGCTGTAATCCGGTGCGTCTCTGCGCGCGCACTGCGCCGCTCTCACCGTCACCGCGCGCGGACGcgttacacagagagagagagagagagagagagagagactgacgcGGAGAACCGAGAGGAACATGGACCCACAGACCCGAGCTGTGCTTCATCATCCCTCCGCTTCCTAACAGGTTGTGCAACAGCATCATGTCCACTTCATAGCAACAGCCATGAGTCACAGGGAGGAACCAGAGGAGGCAGGGTCCAAAGCCCCAATCCCTCAGCGCATCCGGCAGCCAAACAGTACTCCTGTAGAAGGAGGCCGTCCCAGGTGGAGGCCATGCCAGCTGAACAGCCAAGACGAACAGGGAAATgcccaacatcatcatcatcatcatcatcactaccaTCGACAGTCACACCAACAGCAGCCTGGCACTAATCGAGCTCCACCACGACGCAGCCGAAGACATGCCCCCTGCCACGCCCAGAGGGGGTCGAGTGAGAGTGGAGATGCAGGGCCACAGACAGGTCAGCAGCCTCGTCCAGGTGGGTCGAGGTATCGAAGGAGTGGTGATGGAGGGCATCAGCACAGACATCGACAGCAACCCAGACAGATTCATGCAGTTCCGCAACCCGTCGATGTTCCTGAGATCAATCCGGCCATGGACACTTTGTCTCCTGAGGAGTCTTCCCAGGAACTGCTGACTCCATCTTCACAGGAGGATCTGACTCCTTCCCAGGAGGAACTAACCCCCTCTCCACAGGAGGTATCACCTGTAGAGGAGCAAGATGAAGGTAGCCCAGGTCTACATTGTTCCTCCAGTACTGAGAGCAGCCTTCATGCACACTCTGAGCAGACCGAGGATcagcacagagagagggagcagaCAGAGGAGTGCAAGGGTGGGATAGACGAATGGGAAGTGGAGGGATGTCAGGAAAGGAGAGAGGAGGGGACAGAGTCTCACAAAGATGTTGAACAGGAAGAACAGAGTCAATTGGAGAAGGATTCCATGGCAAACGCTGGTAGTTCAAAAGGTAGTAAGAAGACCAGTAGGAGGTCTGGGCCCATCAGAGTAGATGTTCCACCTTTTGCGGAATTTCCACGTCAGCCACTACCAATCCCTAATTTCCAGGCTCAGCCTTTCTCAGAACCTCTTAGAGGTTACCCCGTGGAGCCCAAATCAGGTCCTATCCATCTCACCTCCGCCAACTACGCTGCCATGAGCACAGACATGAGGTCTGAATGCCAATCAGGTGCTCAGTCCTATGAAGAAACAATTTCAGACACCAGTTCAGAAGCCTTTTCTGCTTCATATCCATCAATCTCTGAGTCCTGTCCAAAGTTCTACCCAGTGACTCCAACAGAATCAGACAGAGAACTGTACCACTCACCACAAACAGGATGGTACCAGGAACACTCTGAGGACCAGCAGGGCTTTGAGAAAAACCATGACATGTCCACCAGTGAGGCTAATCCACAGATCAATCTCCATGAGGAGCAGAGACCACAGGGTTCTGTCGGTTCCAGACTGCACCACTATGACGAATACTCAGGAGATGAAGCTAGCAGTCCTGATAGAAGCAGAAGTAAGGTTTGGAGACGTAGTATAGAACAGGAATGTTCAGAGATCAGAAAGGAGCAGTGTGAGGTTCGTCCTCGTTTGCCTGTATTGGACAGAGAAGAGAAGCCAGAACATGACTCTTTAGAAGATAGACCACATGCTATTCAAGAATCTGCAAATGTTTCTGGAGATGCGATCTCTCTGGCAATAAGAGACATAAAGGAGGCAATCGAGGAAGTGAAGACTAAGACGGTGCGTTCACCGTACACGCCCGACAAACCCAAAGAGCCGGTGTGGGTGATGAGGAGAGACGTCAGCCCGGTGGAGGAGTGCCAGCCACAGCTTTATTCACCTCCATCTCCTCCACAGCTTCCTTCTCCTCAGAACGAGACATGTTCCCAGGTTCTAGCTTCAGATCCCATAGTTCCTCTGGGAGCAGAATCTTCCACAGCTCATGAGCACCAGGAATCAGACATCAGTCCCAGTTTACCAACAGCTGAAGAGctTAGAAGGAACTTGGCTGCTTTTCCTACATATGTTGATGTTCCAGGACCGTGTGATCCAGAGGATTTAATCGATGGTATCATATTTGCAGCCAGTTTTTTGGGTTCCACACAGCTGCTGTCAGAGAGAACGCCGAGTAAGAGCGCCCGCATGCAGCAGGCTCAGGAGGCCATGACCCGCGTCCGGGGTGCAGGAGGCGAGCTTCTCTCTACCACTGAGGTGGATCTCTTCGTGTCGACTCAGAGGATTAAAGTTCTCAACGCTGACACACAGGAGACAATGATGGACCATCCTCTGAGGACCATCTCTTACATCGCGGACATCGGGAACATGGTGGTCCTGATGGCGCGCAGGAAGATGATCCGCTCTCGCAGCGCTCAGGAGCAGCTGGACACAGCCGATGCTCAGCAGTTGAACCCGGCGCAGGAAGAACAGCGGCAGTACAGGATGATCTGCCATGTGTTCGAGTCAGAGGACGCTCAGTTGATCGCTCAGTCCATCGGTCAGTCCTTCAGCGTGGCGTATCAGGAGTTCTTGCGCGCGAATGGTATCGATCCGGAGGACCTGAGTCAGAGAGAGTACAGCGACCTGCTCAACACTCAGGACATGTACAACGACGACCTCATCCACTTCTCCAAGTCTGAGAACTGCAGAGACGTGTATATAGAGAAGCAGAAGGGTGAAATCCTGGGTGTGGTGATCGTGGAGTCCGGATGGGGCTCCATCTTACCCACCGTCATCATCGCCAGCCTGATGCACGCTGGACCGGCGGCGAAATCCGGCCGTCTCAACATCGGAGATCAGATCATGACGGTGAACGGGACGAGTCTGGTGGGTCTGCCGCTGTCCACCTGCCAGAGCATCATCAAGGGCCTGAAGTCTCAGTCCAGGGTTAAGATGAACATTGTCAGATGTCCTCCAGTCACCATGGTCCTCATCCGCAGACCAGACCTCCGCTACCAGCTCGGCTTCAGCGTAcagaatggcattATCTGCAGTCTGATGAGGGGGGGTATTGCAGAAAGGGGCGGAGTCAGAGTGGGCCACCGCATCATCGAGATTAACGGGCAGAGTGTGGTGGCCACGCCCCACGAGAAGATCGTTCATATTCTGTCTAGTGCTGTAGGAGAGATCCACATGAAGACCATGCCTGCTGCCATGTACCGCCTGCTGACGGCGCAGGAACAGCCCGTCTACATCTGAACCCCGCTAACGTAAAGATCGCTAACATCGCTACGCCTCACCCTCACACTCCGTCACACTTCACATGATTATCAGATTGTTTACAGATTTCTTACTCCGGAAGTAAAAACTTTTCCTCTCATAATATTTTAATCTGCCTTAATAACGTGTGTAATTGTGGAGAGAAGCTACATCACCCAGACATGCTAGCATTAGCTCGGTTGCTAACTCTACTAGGATGTAAACTGGATTACAGCCCAAAGGCtaaatgcagtgtgtgataATCGTGTTAGAACTGATGGTTTGTTGGTTCCTATGACATATTGCTTATTTTACTATTAGCCTTCAaagttttggtttggttttttttttttattttattttgggaTAAAGTCTCATTTTTGTGCAAGTGTCATGGATTTTTGTTTACAGGAGATTAACGTTTCAGACTTTGGTGTTCATCAGAGAAGATTTGCCAGATTTATAGCTTCTATTTCAGATGAAAGATTTCTTTAAGTATATGAAGGGATTTTGTTAGAGGTCTATGATTATGAAATCTCTCCGTCACTGGAataattaagaaaagaaaattaataactacatttattacgtgcacacacacacgttcctcCATACGACACGTTTCTCTAACAGCCAAAGACTAAAATCCagagatttatttatcatttgaaCACTGGACCTACACTAACGTCAGCCTGAGCAGCgccgcaggtgtgtgtgtgtgtgtgtgtgtttgtgatgttatatattacacaatatGAAGTTATGGTGCAGAAATAACCTGAGAAACAACACTGTTATTCATGAAAGTAAAGGAAAACTGCATAGAGctgaa

Function

NR:

description
amyloid beta A4 precursor protein-binding family A member 1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026911826.2 True 5053 mRNA 0.49 13 24718729 24733547

Neighbor

gene id symbol gene type direction distance location
nln nln,LOC107743138 coding upstream 193506 24503863 ~ 24525223 (+)
ppwd1 ppwd1 coding upstream 253629 24457036 ~ 24465100 (+)
cwc27 cwc27,LOC107744252,LOC107713303 coding upstream 359606 24310031 ~ 24359123 (+)
cops4 cops4,csn4,LOC107685106,LOC107558694 coding upstream 422004 24276082 ~ 24296725 (+)
LOC113544070 kiaa1958,LOC107683261,LOC106568575 coding upstream 466661 24233760 ~ 24252068 (+)
G274662 NA non-coding upstream 35790 24681463 ~ 24682939 (+)
G274653 NA non-coding upstream 66532 24651750 ~ 24652197 (+)
G274646 NA non-coding upstream 135451 24582981 ~ 24583278 (+)
G274639 NA non-coding upstream 180993 24537130 ~ 24537736 (+)
G274624 NA non-coding upstream 226873 24491415 ~ 24491856 (+)
G274696 NA non-coding downstream 21635 24755182 ~ 24755384 (+)
G274710 NA non-coding downstream 45514 24779061 ~ 24779322 (+)
G274714 NA non-coding downstream 49349 24782896 ~ 24783522 (+)
G274704 NA non-coding downstream 51252 24784799 ~ 24808503 (+)
zfand5b zfand5,LOC108277070,LOC108428885,LOC107742939,LOC107726558,LOC107705050,LOC107667265 other upstream 60028 24599862 ~ 24658701 (+)
erbin erbin,erbb2ip other upstream 79087 24529978 ~ 24639642 (+)
trappc13 trappc13,LOC107667267,LOC107726564 other upstream 220087 24480599 ~ 24498642 (+)
LOC117599389 NA other upstream 485910 24226154 ~ 24232819 (+)
hsdl2 hsdl2,LOC107558693,LOC107744249,LOC107658673,LOC107685110 other upstream 605876 24103073 ~ 24112853 (+)

Expression


Co-expression Network