vps26c (dscr3)


Basic Information

Item Value
gene id vps26c
gene name dscr3
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 11641023 ~ 11649190 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026941586.2
ATAGAAAATCGTCACGTGGTTCCGATAACCAGGAAGAGACACTACAGAAAATACACAGTGTTCTTTACAGTGTTTGAGAAAATGAGTGTTACCTTGGATTTAAGGCTTAAGCGTGCGAACAAAGTGTATCATGAAGGGGAGGTCCTGGCTGGAGTGGTGGTGATCACCAGTAAGGAAGCTGTGCAACACCAGGGAATCACCCTCACCATGGAGGGTCTTGTTAACCTGCAGCTCAGCTCCAAGAGTGTTGGCGTCTTCGAGGCTTTTTACAACTCGGTCAAGCCCATTCAGCTGATCAGCAGTAGCATTGAAGTGGCCAAACCAGGCAAGGTGCCAGGAGGCAAAACTGAAATTCCCTTTGAGTTTCCGCTGCAAgcaaaaggaaataaagtgCTGTACGAGACCTACCATGGTGTTTTCGTCAACATTCAgTACACTCTCCGCTGTGATATGAAGCGCCCTCTGCTGGCAAAAGACCTGAGCAAGACCTGCGAATTCATGGTCCATTGTCAGCCACAGAAATCCAAAGTGCAGCTGACTCCAGTTGATTTCACCATCACACCAGAGACGTTGCAGAATGTGAGAGAGAAGAGTTCTCTCCCAAAGTTCCTGATCAGAGGCCGCCTCGATGCCACTAACTGTGTGATCACACAGCCGCTCACAGGGGAGCTGGTGGTGGAGAGTTCAGAGGTCGCCATCAAAAGCATCGAGCTGCAGCTAGTCCGGGTTGAGACGTGCGGTTGTGCTGAAGGCTATGCCAGAGATGCGACAGAGATTCAGAACATCCAGATAGCAGAGGGAGATGTGTGTCATGGCCTCCCCATCCCTATATACATGGTCTTCCCCAGGCTTTTCACATGCCCTACACTCGAAACCACAAACTTTAAAGTTGAGTTTGAGGTGAACGTGGTGATTGTTTTTCACGATGATCATTTAATAACTGAGAACTTCCCGTTGAAGCTGTGCCGAGTATGAGATCAGAGCCTGCAGATTCATTGATGTTTTCTGGAAGACTCTGGGAGTGGCCTTACAACTGTTTAACTGCCAGTCAGCAATGAGCAGGATGGCTTTTGTTACAGCTAAAGACAtaattgacataattattacatACATGCCATTTTCGGCACTTACTGTGTCAGTTTTTTGAGTTCTTGGAATCATTGTCGGAAAGCTAGCCCATTTGTtccctctttttattttctggttTTTGTATGACTGGGTTTTTTATGTGATCAAATCAGTTCATTTCAAACATGCTAGTATCATATGGCAAAGAGCAGAACTGCCTGTAAATTTCCCTTATAATTAtagcatttaatataaaagttGTGTACATTACTTTGCGCTTAGatattcatttactttcttcctgacaaggaaaaaaagtgtgtgtgacctTTGTGTCCCTTGTATAAAACATAAAGTACAAGAATAAATTAGTACTAATGTTATttccataaaataaatctggtaTACATca
>XM_026941588.2
ATAGAAAATCGTCACGTGGTTCCGATAACCAGGAAGAGACACTACAGAAAATACACAGTGTTCTTTACAGTGTTTGAGAAAATGAGTGTTACCTTGGATTTAAGGCTTAAGCGTGCGAACAAAGTGTATCATGAAGGGGAGGTCCTGGCTGGAGTGGTGGTGATCACCAGTAAGGAAGCTGTGCAACACCAGGGAATCACCCTCACCATGGAGGGTCTTGTTAACCTGCAGCTCAGCTCCAAGAGTGTTGGCGTCTTCGAGGCTTTTTACAACTCGGTCAAGCCCATTCAGCTGATCAGCAGTAGCATTGAAGTGGCCAAACCAGGCAAGGTGCCAGGAGGCAAAACTGAAATTCCCTTTGAGTTTCCGCTGCAAgcaaaaggaaataaagtgCTGTACGAGACCTACCATGGTGTTTTCGTCAACATTCAgTACACTCTCCGCTGTGATATGAAGCGCCCTCTGCTGGCAAAAGACCTGAGCAAGACCTGCGAATTCATGGTCCATTGTCAGCCACAGAAATCCAAAGTGCAGCTGACTCCAGTTGATTTCACCATCACACCAGAGACGTTGCAGAATGTGAGAGAGAGTTCTCTCCCAAAGTTCCTGATCAGAGGCCGCCTCGATGCCACTAACTGTGTGATCACACAGCCGCTCACAGGGGAGCTGGTGGTGGAGAGTTCAGAGGTCGCCATCAAAAGCATCGAGCTGCAGCTAGTCCGGGTTGAGACGTGCGGTTGTGCTGAAGGCTATGCCAGAGATGCGACAGAGATTCAGAACATCCAGATAGCAGAGGGAGATGTGTGTCATGGCCTCCCCATCCCTATATACATGGTCTTCCCCAGGCTTTTCACATGCCCTACACTCGAAACCACAAACTTTAAAGTTGAGTTTGAGGTGAACGTGGTGATTGTTTTTCACGATGATCATTTAATAACTGAGAACTTCCCGTTGAAGCTGTGCCGAGTATGAGATCAGAGCCTGCAGATTCATTGATGTTTTCTGGAAGACTCTGGGAGTGGCCTTACAACTGTTTAACTGCCAGTCAGCAATGAGCAGGATGGCTTTTGTTACAGCTAAAGACAtaattgacataattattacatACATGCCATTTTCGGCACTTACTGTGTCAGTTTTTTGAGTTCTTGGAATCATTGTCGGAAAGCTAGCCCATTTGTtccctctttttattttctggttTTTGTATGACTGGGTTTTTTATGTGATCAAATCAGTTCATTTCAAACATGCTAGTATCATATGGCAAAGAGCAGAACTGCCTGTAAATTTCCCTTATAATTAtagcatttaatataaaagttGTGTACATTACTTTGCGCTTAGatattcatttactttcttcctgacaaggaaaaaaagtgtgtgtgacctTTGTGTCCCTTGTATAAAACATAAAGTACAAGAATAAATTAGTACTAATGTTATttccataaaataaatctggtaTACATca

Function

NR:

description
Down syndrome critical region protein 3

GO:

id name namespace
GO:0007034 vacuolar transport biological_process
GO:0030904 retromer complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026941586.2 True 1480 mRNA 0.44 8 11641023 11649190
XM_026941588.2 False 1477 mRNA 0.44 8 11641023 11649190

Neighbor

gene id symbol gene type direction distance location
kcnj6 kcnj6 coding upstream 23702 11553248 ~ 11617321 (+)
erg erg coding upstream 127555 11467130 ~ 11513468 (+)
psmg1 psmg1 coding upstream 211185 11424549 ~ 11429838 (+)
klhl35 klhl35 coding upstream 240923 11392935 ~ 11400100 (+)
emsy emsy,LOC107671635,LOC107690840 coding upstream 274672 11347581 ~ 11366351 (+)
pigp pigp coding downstream 37125 11686315 ~ 11691822 (+)
hlcs hlcs coding downstream 47790 11696980 ~ 11723734 (+)
LOC113543498 crybg3 coding downstream 110163 11759353 ~ 11797070 (+)
cblb cblb,LOC102193754,LOC102306619 coding downstream 299596 11948786 ~ 12031535 (+)
picalma picalm,picalma,LOC107744613,LOC107699270 coding downstream 658143 12307333 ~ 12348359 (+)
G267314 dyrk1a non-coding upstream 13051 11624374 ~ 11627972 (+)
G267257 NA non-coding upstream 208161 11432659 ~ 11432862 (+)
G267103 NA non-coding upstream 529426 11111386 ~ 11111597 (+)
G267090 NA non-coding upstream 553160 11086248 ~ 11087863 (+)
G267070 NA non-coding upstream 584002 11056612 ~ 11057021 (+)
G267317 NA non-coding downstream 1239 11650429 ~ 11652188 (+)
G267362 NA non-coding downstream 179379 11828569 ~ 11828818 (+)
G267381 NA non-coding downstream 214697 11863887 ~ 11868663 (+)
G267429 NA non-coding downstream 331991 11981181 ~ 12011289 (+)
G267499 NA non-coding downstream 781894 12431084 ~ 12431810 (+)
scaf4a scaf4,LOC107555128 other upstream 758758 10865612 ~ 10882265 (+)
G266868 LOC108276566 other upstream 1070318 10569028 ~ 10570705 (+)
dclk1a dclk1,LOC107728871,LOC107577778 other upstream 1878326 9704360 ~ 9762697 (+)
LOC113543674 NA other upstream 2216168 9419665 ~ 9424855 (+)
G266161 NA other upstream 2304733 9335801 ~ 9336290 (+)
vps36 vps36,LOC107701118 other downstream 3113123 14762313 ~ 14771073 (+)
trnar-ccu_11 NA other downstream 5438478 17087668 ~ 17087740 (+)
trnam-cau_40 NA other downstream 5438558 17087748 ~ 17087819 (+)
trnar-ccu_12 NA other downstream 5439259 17088449 ~ 17088521 (+)
trnam-cau_41 NA other downstream 5439339 17088529 ~ 17088600 (+)

Expression


Co-expression Network