slc25a1a (slc25a1a,LOC108276564,LOC108424536,LOC107586170,LOC107708615,LOC107720673,LOC107554324)


Basic Information

Item Value
gene id slc25a1a
gene name slc25a1a,LOC108276564,LOC108424536,LOC107586170,LOC107708615,LOC107720673,LOC107554324
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 13899564 ~ 13904855 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026941712.2
atgagcaTCCTACCGCCAGGCCACCGAGTGGAGCGCCAGTGATTGTGTTGGCTTTGTCTCATTGGACAGGACGCACGTTGTTGGGTGTCATATTCCGTAAAAGCGCAGgggttcatttgtttttctttgcgCGCAGGAAGATGTCGTCTCTGTACAAGCCGTTCTGTGTTTCCGATGGACCGTGTAAAGATGCGATTTGGAGACGCGGATGTAGCTCTGAGCAGCATCCCGCAGCGCTGAGCTCGGCGTGTTTGGGTGGCTTAGCGAGCAGTTTCACCCCAATTCACACCATGTGTGAAGGAAAACGGCGTTTTGCAGCTGCTGCAACCGGCGGGAGGAAAATCACTCACCCAGGAAAGGCAATTCTTGCAGGTGCCATTGCAGGAGGTATTGAAATCTGCATCACCTTCCCAACAGAGTATGTGAAGACTCAGCTGCAGCTGGATGAACGTGCAAACCCACCTCGTTATCGAGGGATAGGGGACTGTGTGAGGCTGACTGTTCAGGATCACGGTTTGAGAGGGCTGTACAGAGGCCTGAGCTCACTACTCTATGGCGCCATCCCAAAGTCTGCAATTCGATTTGGCACATTTGAGGTCCTGAGCAACCCAATGAGAGATGAAAGTGGTCGCCTTGATAACactcgcagcttgctgtgtggCCTGGGAGCGGGCATCGCTGAAGCAGTGCTAGTGGTCTGTCCAATGGAAACGCTCAAGGTGAAGTTAATccatgaccagtgctctcttcaTCCACGGTACAGAGGCTTCTTCCATGGCGTGCGGGAAATAATTCGTGATCAGGGGGTTCGTGGTACGTACCAAGGGCTGACTGCTACAATACTGAAACAGGGTAGCAATCAAGCTATAAGATTTTATGTCATGAACCTTCTGCGCAATTGGTATAAAGGTGATGACCCTACACGTGAGATGCACCCGCTGGTCACGGCCATATTTGGGGCGACTGCAGGTGCAGCAAGTGTCTTTGGAAACACACCTTTGGATGTGGTGAAGACCAGGATGCAGGGTCTGGAAGCTCATCGTTATAAGAACACGCTAGATTGTGCTTTCCAGATACTAAAGAATGAAGGCCCACAAGCGTTCTACAAAGGCACGGTTCCTCGGCTGGGCCGGGTGTGTCTGGATGTCGCCATTGTCTTTGTCCTGTATGAGGAGGTTGTAAAGCTTCTGAACAAAGTCTGGCAGACAGACTGAGGACATTAACAGCCTGCTCTGTAGAGAATGATGACTAATGTAGACACAGTTGGTAGTGTCACTCAAATGACAAGGCTGACTGTTACACTGACCCCTGGCTGAGTGCACTGGGTTAGGCAGCTATCTGCATGAGAGGGAGGGTGGAGAATTAAGCTCACAAGTGGTGTTCTGATGCACAGCATACTACTAATGTTTCTATCTAGCACATACATGCAAAGAATGTTATCAAGTTGCACTTTTTCACTTAATGCAAAACCATGCAGCTGTGTTGACTCCCATCTTCTTACTCGTACTAATCCACTTGTGTGGCAAACCCCAGTTTAAATCAAAGTCCACAATTCCCTTGCTCTCAATTTAACCAACTTGTATAGATCTTAAATTTTTCTATTAATTgcactgaaatatatttaacaaaataaagaacTGGTTTAGATGTA

Function

symbol description
slc25a1a Involved in neuromuscular junction development. Acts upstream of or within regulation of mitochondrion organization. Predicted to be located in mitochondrial inner membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in 2-hydroxyglutaric aciduria; combined D-2- and L-2-hydroxyglutaric aciduria; and congenital myasthenic syndrome. Orthologous to human SLC25A1 (solute carrier family 25 member 1).

NR:

description
PREDICTED: tricarboxylate transport protein, mitochondrial

GO:

id name namespace
GO:0006810 transport biological_process
GO:0010821 regulation of mitochondrion organization biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K15100 SLC25A1, CTP; solute carrier family 25 (mitochondrial citrate transporter), member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026941712.2 True 1651 mRNA 0.48 9 13899564 13904855

Neighbor

gene id symbol gene type direction distance location
si:dkey-175g6.2 LOC108276627 coding upstream 9583 13884461 ~ 13889981 (+)
c17h17orf49 cq049,LOC108424543,LOC105902403 coding upstream 61485 13833427 ~ 13838079 (+)
med11 med11,LOC107720680,LOC107676028 coding upstream 68368 13826792 ~ 13831196 (+)
arrb2a arrb2,LOC100335038,LOC106567894,LOC105023937 coding upstream 76726 13811706 ~ 13822838 (+)
tmem126a t126a,tmem126a coding upstream 114660 13782347 ~ 13784904 (+)
ltn1 ltn1 coding downstream 9153 13914008 ~ 13939043 (+)
paxbp1 paxbp1 coding downstream 729636 14634491 ~ 14654548 (+)
slc7a1a slc7a1,LOC108277031,LOC103044157,LOC108410642,LOC107592154,LOC107718716,LOC107685000,LOC107720662 coding downstream 752107 14656962 ~ 14673374 (+)
mtus2a LOC108277280 coding downstream 770250 14675105 ~ 14731263 (+)
LOC113543478 LOC108277282 coding downstream 830578 14735433 ~ 14742688 (+)
LOC117599363 NA non-coding upstream 35929 13859796 ~ 13863635 (+)
G268587 NA non-coding upstream 373179 13521152 ~ 13526385 (+)
G268580 hspa8,LOC107577128,LOC100125490,LOC108423781,LOC107691633,LOC108277936,LOC107597532 non-coding upstream 424066 13432734 ~ 13475498 (+)
G268027 NA non-coding upstream 1133197 12766153 ~ 12766367 (+)
G267801 LOC107739129 non-coding upstream 1377043 12522186 ~ 12522521 (+)
LOC117599376 NA non-coding downstream 37830 13942685 ~ 13947023 (+)
G269251 NA non-coding downstream 650631 14555486 ~ 14556349 (+)
G269268 NA non-coding downstream 692109 14596964 ~ 14597818 (+)
LOC117599336 NA non-coding downstream 693752 14598607 ~ 14604363 (+)
G269393 NA non-coding downstream 878106 14782961 ~ 14783685 (+)
scaf4a scaf4,LOC107555128 other upstream 3017299 10865612 ~ 10882265 (+)
G266868 LOC108276566 other upstream 3328859 10569028 ~ 10570705 (+)
dclk1a dclk1,LOC107728871,LOC107577778 other upstream 4136867 9704360 ~ 9762697 (+)
LOC113543674 NA other upstream 4474709 9419665 ~ 9424855 (+)
G266161 NA other upstream 4563274 9335801 ~ 9336290 (+)
vps36 vps36,LOC107701118 other downstream 857458 14762313 ~ 14771073 (+)
trnar-ccu_11 NA other downstream 3182813 17087668 ~ 17087740 (+)
trnam-cau_40 NA other downstream 3182893 17087748 ~ 17087819 (+)
trnar-ccu_12 NA other downstream 3183594 17088449 ~ 17088521 (+)
trnam-cau_41 NA other downstream 3183674 17088529 ~ 17088600 (+)

Expression


Co-expression Network