fhdc3 (LOC108276923)


Basic Information

Item Value
gene id fhdc3
gene name LOC108276923
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 10507226 ~ 10519216 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026941715.2
gggcgtggcttgGCGAATTGATAAAGTGCCTTTTGATTAGAGCGCTGGCGTTGCGCTGGTTTGCTGCTTCACTGCTGCGATGCCTGTCACTTAACGCGCCTTATTTTCGGCTCTCAGGTTACATTGGATTGCTCCAGCTCTGCTATCCTGGATCCTGCGAATCATCCACTCATTTGGAGCTGAAGTGGGCCTACTTTGGGTATCCATCCCATAATTTCCAATGGATGGCGTTGCCATGTCCATCGGaccttctcttctttctccaccaccacctcctcctcctcttcctcctcctcctccgcctcCTCCCCCCATTATAGGAAACGAACCGTTCTCACGCAGTGTTCACCGGCGCTCCAAGATGCGCAACTTCAACTGGGACACCATTCCAAGGCATAGCGTGGTCGGGAAGCGCAACGTCTGGACGTCAAACAAGAAGCTGGAGGACATTCCGCTGGACACCAAACGCATCGAGGAACTGTTTAGCCACAGTGAATGTCAGCAGATGCCACCCAGGCATGGCACCGTCAAGAAGAGTGTGTGGGGCCTGCAGTCCACCAGTCCTGTGTCAGAGattGTCTCAATCCTTAACTCAAAGAAAAGTATGAATATTGGGATTCTCCTGAAGCAGTTTAAAAGGCCAATTCAGGACATCGTTGAGGATATCAGGGAGGGAAACATGCGATTTGCTGCTGGCAGACTGAGAGAGCTGAGCAAGCTGCTGCCTGATGATGTGGAGGTGAAGAAGCTGTTGTCATTCCATGGTGACGCGTCTCAGCTTGCAGAGGCAGACCGTTTCTTCCTGATGCTGGTTAATGTTCCTGGATATGAAGAAAGACTGAAAAGCCTGCTCCTCAGAGAGGAGTTCATGCCCTTTATAGAGGAGATGAAAAAATCCATTTCCATCATGACTGCAGCAGCTAATGagctgctggcGTGTGATGATCTACATTCTATAATCAGACTGGTGCTTAAAGCTGGAAACTACATGAATGCTGATGGCTACGCTGGTCGTGCGATAGGTTTCAGAATGACTTCTCTCCTGAGGCTTGTGGACACCAAAGCTAACAAACCTGGCATGAACCTTATGCACTATGTGGCTATGCAAGCTCAGCAGATTGACGGCGACTTATTAAGGTTTACAGAACAGCTTCAACACATTGGAGAAGCATCAAGaattcaaaaacaggaagtagaaacagactttaagagagaaatggcaaaaactaaagaagcaaaggCCTATGTCAGCAAACAACCTGATCTGCAACATCAAATGGAGGACTTTCTTCAAATGGCCACAAGTCAGCTCGCAGATGTGGAGGCCTCTCTAAGGGAGCTGGATTCAATCAGTCACTCAGTGGCCGAGTATTTCTGTGAAGACCCTGCTACCTTTAAACTGGAGGAATGCTGCAAAATCTTCCACTCTTTCTGTGAGAAGTTTGAGAAAGCTGTACTGgAAAATACAGAACGAGAGGCAGTGGAGAGGCGCCGAAGgcagcagagggagagagagacactgagccGGGTAGCCAAGCGCCGTACAATCGCCGCCTGCTCTAAGCAAAGCTCAGAACACGAGGCCCTGGAGTCCGTCCTCAGCAGCTTCCTCAGCACTCGTCCTTCCCGCAGAAGGCAACCCTCATCCAACAGAGAAAGTCCAACAGAGATGCTGGACAAAAACAACCCACTGGCCGAGAGGTCTCCCATAGCTCTGGATAGTTCTGTTAATATGGACAAAAAGGATGCAAGTGTTTCAGTTCAAGAGCAGGACCAGAGCTTCCAGATAACCCTTGAGATTCCTGCCATGACGGAACAAAACGAGATTTCACACCCTGAGGAGCAGGACAAGAGCTCTCTGATAGCCCAGGATAGCCCTGAAAAGGTAGAGCCTGTTGTTTTTCAGgatgagagacaggaagagaaatgCTTAGACACAGAAAAAACCTGCTGTGGTGTGAATGTACAGTGTACACCAGCTGGCTCAAAAAGAGCACCATGCATAGAAGACAAAGCAACTCCGAAGAGCAGCAAAACAAACCGTCGCAGGAGCATACTTGTAAGACAGAACGGTGGAGAGAACGATGagcaggagaagaagaaggaagaggcAGATGAACCACAGGAGGATTCCCTGAAGGAGCCGCGTCGGATTAGGTGCCCTGTTTCAGATGCAGAAAAGTGTCTAAATGTTACAGATGTCTCCTCTCCTCATCACAGAGGAATACAAGAGGTGGACTTGGCCTTTCAGAATGGCTTTGGATCACCTTGGACTGTTCTCAGTCCTCACGTCTCACCCTCATGCATGCGGCACCGGAGGCATTCCTTTGGTTCCGTTAAAGATGAAGAATCAGAGGATGGAGTGTGGGCACTGCCTGATACGCCCTTAAAGGTCCCTCTACTGGCACACACGTGCAGGTCATATGAGCACAGCATATCTACCTCTGTGATTAGCCATGTGGGAATTCGAGATTCTCCATTAAAAGGCACATCAACGCAAGGAACTCTGTTAAGATCTGCATCGGTGGGTGAAAACCCTGAATCCATACCCAGCTTTCGTTTCAGTGCTTTCTTCCCAAGACGCCATGGACGAGAAACCAAAAGACAAGAGCCGTCTTCACTGATGTCCTTCTTCCAGCGATTTGGGGAGAGAGGAAGGCCTGCTTCTATAGGAGACTCATGCAGAGTGGATACTTGAATTTTTGCTCCATTTTGGTTTTTgcgtgtgtttttatttatttatttttttccccacttttttaaaaagatttagcATTGTGTGCTCTCACGCACTGCACAATGAACACTGTAACCCAAGACAAATATGGACTTGTTTTGGAGTGTGGTCATTGTGGCCTTAAATGAATCCTCTCCAcaaaagtgtttattatttatttgtattccatttttttcttaatctaCACTTCttaatgatatttttagctCTGTGGATTTAATGCACTTTAAAATTCCTGATGAGAGTCCATCCTCAACACTCCCAAACACTTGTTTGTTTGCTCcattttcatgtttattgtgtatacttttatataataaagtgtGGCATTCCACCTTAA

Function

NR:

description
FH2 domain-containing protein 1-like, partial

GO: NA

KEGG:

id description
K23958 INF2; inverted formin-2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026941715.2 True 3077 mRNA 0.47 12 10507226 10519216

Neighbor

gene id symbol gene type direction distance location
arfip2b arfip2b,LOC108276920,LOC108438961,LOC107718740,LOC107555180,LOC107701145,LOC107557232 coding upstream 1784 10485024 ~ 10505442 (+)
dchs1b LOC108277286,LOC108438972,LOC107718741,LOC107701146,LOC107555179,LOC105907404,LOC107720538,LOC107693876 coding upstream 59061 10353267 ~ 10448165 (+)
slc46a3 slc46a3 coding upstream 187055 10302573 ~ 10320171 (+)
eva1c eva1c coding upstream 238476 10255575 ~ 10268750 (+)
hunk hunk,LOC108423838,LOC107691675,LOC107577711,LOC107734458,LOC104954747 coding upstream 265461 10232706 ~ 10241765 (+)
trim3b trim3b,LOC108276924,LOC108423836,LOC107701140,LOC107557229,LOC107720632,LOC107718737 coding downstream 802 10520018 ~ 10554251 (+)
trpc4a trpc4,LOC108423767 coding downstream 219086 10738302 ~ 10759716 (+)
postna postn coding downstream 257086 10776302 ~ 10811764 (+)
sod1 sod1 coding downstream 365060 10884276 ~ 10890564 (+)
tiam1a tiam1,LOC108423828 coding downstream 395486 10914702 ~ 10975096 (+)
G266580 NA non-coding upstream 503865 10003146 ~ 10003361 (+)
G266499 stard13,LOC107691680 non-coding upstream 561647 9944113 ~ 9945579 (+)
G266497 NA non-coding upstream 566926 9937395 ~ 9940300 (+)
G266495 NA non-coding upstream 571013 9935989 ~ 9936213 (+)
G266416 NA non-coding upstream 740731 9764641 ~ 9766495 (+)
G266802 NA non-coding downstream 27605 10546821 ~ 10547182 (+)
G266869 NA non-coding downstream 52675 10571891 ~ 10572147 (+)
G266871 frem2a,LOC108276566,LOC107701139,LOC107555183,LOC107693873,LOC107718779,LOC107720635 non-coding downstream 61643 10580859 ~ 10581182 (+)
G266892 NA non-coding downstream 147602 10666818 ~ 10668314 (+)
G266901 NA non-coding downstream 213321 10732537 ~ 10734630 (+)
dclk1a dclk1,LOC107728871,LOC107577778 other upstream 744529 9704360 ~ 9762697 (+)
LOC113543674 NA other upstream 1082371 9419665 ~ 9424855 (+)
G266161 NA other upstream 1170936 9335801 ~ 9336290 (+)
LOC113534874 LOC108276751 other upstream 1243115 9256943 ~ 9264111 (+)
G265807 LOC107756568 other upstream 1837429 8668814 ~ 8669797 (+)
G266868 LOC108276566 other downstream 49812 10569028 ~ 10570705 (+)
scaf4a scaf4,LOC107555128 other downstream 346396 10865612 ~ 10882265 (+)
vps36 vps36,LOC107701118 other downstream 4243097 14762313 ~ 14771073 (+)
trnar-ccu_11 NA other downstream 6568452 17087668 ~ 17087740 (+)
trnam-cau_40 NA other downstream 6568532 17087748 ~ 17087819 (+)

Expression


Co-expression Network