ypel2a (LOC106603438,LOC106931471,LOC106940241,LOC101067200,LOC107659943)


Basic Information

Item Value
gene id ypel2a
gene name LOC106603438,LOC106931471,LOC106940241,LOC101067200,LOC107659943
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 9524383 ~ 9536080 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026941865.2
TTCAAACTGGAGGCGGGGTGTTAAGCCCGTGCGCCACCGCGCTGTATGTATTTACAGTGTATATTTATAGCCGTGCAGGAGAATGAACGATTTATTGAAAGTTTATCGAGTATAGTGTTAGCGACTTACTGTGTGTGAATTTGGACGGTACTACTGACACTTCTCCAGTCTTTTCCATTCTGAGGTGTGATCCCTCCTCTTTTGAGTTCCACCACGGCCCTCACCTGTGTGCTCCACTGCTTCCCCTGCGAGCCGTCCTGGGCTGATCGGCCGTTCCCACTGCGCTCCCGTGCTGTCTCACCTGCCACTGCTGCCATGACACGCTCTAAGACCTTTCAGGCCTACTTACCCAACTGCCACCGCACATACAGCTGTATCCACTGCAGGGCTCATTTGGCCAATCACGACGAGCTCATCTCCAAGTCTTTTCAAGGTAGTCAAGGCAGAGCCTATCTGTTCAACTCTGTGGTAAATATTGGTTGTGGGCCAGCTGAGGAGAGGGTGCTACTGACAGGTCTCCATGCTGTGGCTGACATCTACTGTGAAAATTGCAAAACCACGCTGGGCTGGAAATATgagcatgcctTTGAGAGCAGTCAGAAGTACAAGGAGGGCAAGTTCATCATTGAGCTTGCCCACATGATCAAGGACAATGGGTGGGACTGATGCCCTCGATACTCCTGTGGACCTGTGGCATGAATGCATAGCTTGTTCCTGGATACTCACCCACCTAACCTACATCTTGAGGATGTGAGATGTATAATCAGTGCTGTGCCTCTCCTGTATGCACATGTGCGCGCGCGTGATTGTCAGCATCACATTGAGAATTTGCATTCTAACAGAGTTATTGCTCAATTCAAGTCAGAAAACGCACTGCATCCTTATAGCACATCCATGCTTGTGTAAAGACAGTGAAACCAGGTAGCTGGATGGAATAGGTTTCACAAAACCCACTTCAGTTCCACTTGCAGGCTTCCCCAATGGCTGGACCCATGgagaaaataaatgtagtgCAGCACCTTACACAAGTGACTGCTGATCATTTTACttgaaacactaaaacacttCAGCTGTCCATCAAAAGAACAGTTGCTTCTTTCTTGCTCCTTTTTCTTTGATGGTTtgcacatgatttatttatactcGTATTTATTTATCTTGATTTCTTTATTAGGTTCAGGGACAATGATCCTTATGTTGAACCTGTAGCAGCCCTGAGTTTTTTCAGTAGTAGCATCTTTATGGtgaagtcacttcacttcacttcactttatatGTCCTTTCTCTTCAGAATGttcaaccctttttttttatgtgtgtagtGATTGTAATATATGTGGGTCAGTTATACATGTGTTCACTCTCCCCTCAGCATTATGGATCTTTggttaatatttatgattgggGTGTGCTcgatctctctctttctgtctttttaatatcatcattattaacaataacataataataataataataatgtgattgaCTCTGATTTTAGCACAGTCCTCTTGCTTAAATCGAATCAGACCAGTAAGATCACCAGACATCACAGAAAGTAATTTTAATAAGCTATATAATAAGCCCCCCACGCATAACCAAAGACTTCTCAATCAACAGTATGCTGACCAAATTGTGAGTTCAGTGTCCAGCTTATGTTGcattattgtgtgtagatttCTAGATATGATGATATGGTCATGTTTTGTGTCATCTGGTTGCTTTAATTCAAGTAGTTGCTTTGAACATATGCATTACGCAATTATGTATAAGCACAGTTGGTgtatattattcagttattaattattaattctttAACACACAATCTTGTCATGTCTGTGAGCTGTGAACTGATCCCACTATGGGCTTGATATAATTCCTcctttttacagtttaaaatatgtaatttttttgcttttgctttttcatAAGAAGGAAAATTTGAGATTGAATCAGTATGTTTAAATCTGATATCAGTAAAGCTGAGTTTATGAATGAG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026941865.2 True 1999 mRNA 0.41 5 9524383 9536080

Neighbor

gene id symbol gene type direction distance location
smg8 smg8,LOC107686170,LOC107589184,LOC107743383 coding upstream 568 9516188 ~ 9523815 (+)
prr11 NA coding upstream 10535 9506112 ~ 9513848 (+)
rhbdd2 rhbdd2 coding upstream 34159 9487494 ~ 9490224 (+)
alox5ap alox5ap coding upstream 83316 9433820 ~ 9441067 (+)
uspl1 uspl1 coding upstream 124077 9365347 ~ 9400306 (+)
pom121 pom121c coding downstream 6403 9542483 ~ 9555589 (+)
ripk4 ripk4 coding downstream 32695 9568775 ~ 9580508 (+)
c17h21orf91 c16h21orf91 coding downstream 53936 9590016 ~ 9605564 (+)
supt20 supt20h coding downstream 72167 9608247 ~ 9624536 (+)
alg5 alg5,LOC102793295 coding downstream 94305 9630385 ~ 9639146 (+)
G266260 NA non-coding upstream 27497 9496238 ~ 9496886 (+)
G266185 NA non-coding upstream 76042 9448072 ~ 9448341 (+)
G266184 NA non-coding upstream 77115 9447005 ~ 9447268 (+)
G266159 NA non-coding upstream 121665 9401931 ~ 9402718 (+)
G266160 NA non-coding upstream 122567 9401288 ~ 9401816 (+)
G266282 NA non-coding downstream 3002 9539082 ~ 9539299 (+)
G266277 NA non-coding downstream 40507 9576587 ~ 9580828 (+)
G266323 NA non-coding downstream 52798 9588878 ~ 9589123 (+)
G266416 NA non-coding downstream 228561 9764641 ~ 9766495 (+)
G266495 NA non-coding downstream 399909 9935989 ~ 9936213 (+)
LOC113543674 NA other upstream 99528 9419665 ~ 9424855 (+)
G266161 NA other upstream 188093 9335801 ~ 9336290 (+)
LOC113534874 LOC108276751 other upstream 260272 9256943 ~ 9264111 (+)
G265807 LOC107756568 other upstream 854586 8668814 ~ 8669797 (+)
G265696 NA other upstream 884655 8633635 ~ 8639728 (+)
dclk1a dclk1,LOC107728871,LOC107577778 other downstream 168280 9704360 ~ 9762697 (+)
G266868 LOC108276566 other downstream 1032948 10569028 ~ 10570705 (+)
scaf4a scaf4,LOC107555128 other downstream 1329532 10865612 ~ 10882265 (+)
vps36 vps36,LOC107701118 other downstream 5226233 14762313 ~ 14771073 (+)
trnar-ccu_11 NA other downstream 7551588 17087668 ~ 17087740 (+)

Expression


Co-expression Network