vps36 (vps36,LOC107701118)


Basic Information

Item Value
gene id vps36
gene name vps36,LOC107701118
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 14762313 ~ 14771073 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026941916.2
CGTTGGGCACCAAACCGGAAGTAAACATCTGCTAGTTAAGACACTTCATGTAGGAAATGTATTAATCCAAATTAATATATCGACGCAAGTAGttataattgaaaaaaaaaaatggatcgATTCATGTGGACCAATGGACTCcttgaaatgaatgaaacattagTAATCCAGCAGAGGGGGGTCAGACTATATGACGGAGACGACAAGgCGAAACTCGATGTAGGAGTGGTCCTCCTGAGCACACATCGACTAATCTGGAGGGATCAGAAGAATCATGAGTGCTGTATATGTATACCGCTGTCTCAGATCATATTCTTTGAGGAGCAGGCTGCAGGAATTGGGAAGAGTGCCAAGATTGTCATTCACCTGCATCCAGCTCCTGCTAATAAAGAGCCTGGGCCATACCAGAACAGCAAGTTCTCCTACATTAAATTATCCTTTAAGGAACATGGGCAAATTGAGttttacagaCGTCTGACAGAGGAAATGACTCAGAGGAGGTGGGAGAATACGCCAGTGTCGCAGCCCATTACACCAGCAGGACTGAAGGCAGGAAAAACACGTGCAGTAGGGATTGTTGGCATTGAGCGGAAGctggaggagaagaggaaagagacagacaaaaacatttcagagGCTTTTGAAGATCTCAGCAAGCTTATGGAGAAGGCTAAAGAGATGGTTGAGCTTTCCAGATCCATCGCCAACAAAATCAAAGACAAACAGGGGGACATCACTGAGGACGAGACTATCCGCTTCAAGTCGTATTTGTTAAGCATGGGCATCGCCAACCCCGTAACCAGGGAAACACACGGCTCAGGCACACACTACCACATGCAGCTTGCTAAACAGCTAGGAGACATGCTGCAGGCACCACTGGAGGAGCGAGGGGGTATGATGGCCCTCACAGAGGTATACTGTCTAGTAAACCGAGCACGAGGGATGGAGCTTCTTTCTCCTGAAGACATGGTCAACGCCTGCAAGTTGTTTGAGTCTCTGAAACTCCCtctcagATTGCGAGTGTTTGACAGTGGTGTAATGGTGGTTCAGCTTCAATCTCACAGTGAAGAAGAGATGATTGCATCTGCTATCGATAATGTGTCTGAGAAGGGCTCCTTAACAGCAGAGGAGTTTGCTAAACTCTTAGGACTGTCTGTTCTTCTTGCAAAAGAGAGACTGCTGCTGGCTGAGAAAATGGGGCATCTATGCAGAGACGACTCTGTGGAAGGCCTGCGTTTTTATCCCAACTTGTTCTGATATAGAAGTCTGACAATCAGGAATAGTTTAATTTTTCTACTGGACTCATTTTCTGCTGATCACACAGTGCTCCATACAGAGCAGAACTGTTCACTTTGTAGACTGGACCTGGACCTGCACTGCAGGATGCTCAATTATCAACTGTGTAATAACAGTGAGCAGTGTTATTGGTGAATGTTGGTTTTGATTCTAATTTTACTGTACTTAGTTCTGTATATTTGGGCAAGGGTTTAGAGGTGTCGTGCTTTTTCATTGCTTTGGTTCAAACAAGTctgtaaaatgtaactataaaaccCACTGAATTATGTACTATA
>XR_004579771.1
CGTTGGGCACCAAACCGGAAGTAAACATCTGCTAGTTAAGACACTTCATGTAGGAAATGTATTAATCCAAATTAATATATCGACGCAAGTAGttataattgaaaaaaaaaaatggatcgATTCATGTGGACCAATGGACTCcttgaaatgaatgaaacattagTAATCCAGCAGAGGGGGGTCAGACTATATGACGGAGACGACAAGgCGAAACTCGATGTAGGAGTGGTCCTCCTGAGCACACATCGACTAATCTGGAGGGATCAGAAGAATCATGAGTGCTGTATATGTATACCGCTGTCTCAGATCATATTCTTTGAGGAGCAGGCTGCAGGAATTGGGAAGAGTGCCAAGATTGTCATTCACCTGCATCCAGCTCCTGCTAATAAAGAGCCTGGGCCATACCAGAACAGCAAGTTCTCCTACATTAAATTATCCTTTAAGGAACATGGGCAAATTGAGttttacagaCGTCTGACAGAGGAAATGACTCAGAGGAGGTGGGAGAATACGCCAGTGTCGCAGCCCATTACACCAGCAGGACTGAAGGCAGGAAAAACACGTGCAGTAGGGATTGTTGGCATTGAGCGGAAGctggaggagaagaggaaagagacagacaaaaacatttcagagGCTTTTGAAGATCTCAGCAAGCTTATGGAGAAGGCTAAAGAGATGGTTGAGCTTTCCAGATCCATCGCCAACAAAATCAAAGACAAACAGGGGGACATCACTGAGGACGAGACTATCCGCTTCAAGTCGTATTTGTTAAGCATGGGCATCGCCAACCCCGTAACCAGGGAAACACACGGCTCAGGCACACACTACCACATGCAGCTTGCTAAACAGCTAGGAGACATGCTGCAGGCACCACTGGAGGAGCGAGGGGGTATGATGGCCCTCACAGAGGTATACTGTCTAGTAAACCGAGCACGAGGGATGGAGCTTCTTTCTCCTGAAGACATGGTCAACGCCTGCAAGTTGTTTGAGTCTCTGAAACTCCCtctcagGTGTCTGAGAAGGGCTCCTTAACAGCAGAGGAGTTTGCTAAACTCTTAGGACTGTCTGTTCTTCTTGCAAAAGAGAGACTGCTGCTGGCTGAGAAAATGGGGCATCTATGCAGAGACGACTCTGTGGAAGGCCTGCGTTTTTATCCCAACTTGTTCTGATATAGAAGTCTGACAATCAGGAATAGTTTAATTTTTCTACTGGACTCATTTTCTGCTGATCACACAGTGCTCCATACAGAGCAGAACTGTTCACTTTGTAGACTGGACCTGGACCTGCACTGCAGGATGCTCAATTATCAACTGTGTAATAACAGTGAGCAGTGTTATTGGTGAATGTTGGTTTTGATTCTAATTTTACTGTACTTAGTTCTGTATATTTGGGCAAGGGTTTAGAGGTGTCGTGCTTTTTCATTGCTTTGGTTCAAACAAGTctgtaaaatgtaactataaaaccCACTGAATTATGTACTATA

Function

symbol description
vps36 Predicted to enable ubiquitin binding activity. Predicted to be involved in protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway. Predicted to act upstream of or within endosome transport via multivesicular body sorting pathway and protein transport. Predicted to be located in endosome. Predicted to be part of ESCRT II complex. Predicted to be active in late endosome membrane. Orthologous to human VPS36 (vacuolar protein sorting 36 homolog).

NR:

description
vacuolar protein-sorting-associated protein 36

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0005768 endosome cellular_component
GO:0043130 ubiquitin binding molecular_function
GO:0032266 phosphatidylinositol-3-phosphate binding molecular_function

KEGG:

id description
K12190 VPS36, EAP45; ESCRT-II complex subunit VPS36

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026941916.2 True 1571 mRNA 0.45 14 14762313 14771073
XR_004579771.1 False 1486 misc_RNA 0.45 13 14762313 14771073

Neighbor

gene id symbol gene type direction distance location
LOC113543478 LOC108277282 coding upstream 19625 14735433 ~ 14742688 (+)
mtus2a LOC108277280 coding upstream 31050 14675105 ~ 14731263 (+)
slc7a1a slc7a1,LOC108277031,LOC103044157,LOC108410642,LOC107592154,LOC107718716,LOC107685000,LOC107720662 coding upstream 88939 14656962 ~ 14673374 (+)
paxbp1 paxbp1 coding upstream 107765 14634491 ~ 14654548 (+)
ltn1 ltn1 coding upstream 823270 13914008 ~ 13939043 (+)
LOC113543654 thsd1 coding downstream 1829 14772902 ~ 14779587 (+)
tpte tpte2,tpte,LOC108276937,LOC107718790,LOC107701101,LOC107720658,LOC108410538 coding downstream 17833 14788906 ~ 14796074 (+)
zgc:171929 ovol2,LOC108277324,LOC107746622,LOC107690845,LOC107575147,LOC107671611,LOC107386354 coding downstream 50790 14821863 ~ 14824794 (+)
LOC113543668 kiaa1024l coding downstream 147980 14919053 ~ 14922087 (+)
LOC113543667 LOC108277389 coding downstream 195097 14966170 ~ 14977527 (+)
LOC117599336 NA non-coding upstream 157950 14598607 ~ 14604363 (+)
G269268 NA non-coding upstream 164495 14596964 ~ 14597818 (+)
G269251 NA non-coding upstream 205964 14555486 ~ 14556349 (+)
LOC117599376 NA non-coding upstream 815290 13942685 ~ 13947023 (+)
LOC117599363 NA non-coding upstream 898678 13859796 ~ 13863635 (+)
G269393 NA non-coding downstream 11888 14782961 ~ 14783685 (+)
G269396 NA non-coding downstream 14574 14785647 ~ 14786195 (+)
G269431 dact3 non-coding downstream 89682 14860755 ~ 14863006 (+)
G269569 NA non-coding downstream 357224 15128297 ~ 15157245 (+)
G269583 NA non-coding downstream 403195 15174268 ~ 15174492 (+)
scaf4a scaf4,LOC107555128 other upstream 3880048 10865612 ~ 10882265 (+)
G266868 LOC108276566 other upstream 4191608 10569028 ~ 10570705 (+)
dclk1a dclk1,LOC107728871,LOC107577778 other upstream 4999616 9704360 ~ 9762697 (+)
LOC113543674 NA other upstream 5337458 9419665 ~ 9424855 (+)
G266161 NA other upstream 5426023 9335801 ~ 9336290 (+)
trnar-ccu_11 NA other downstream 2316595 17087668 ~ 17087740 (+)
trnam-cau_40 NA other downstream 2316675 17087748 ~ 17087819 (+)
trnar-ccu_12 NA other downstream 2317376 17088449 ~ 17088521 (+)
trnam-cau_41 NA other downstream 2317456 17088529 ~ 17088600 (+)
trnar-ccu_13 NA other downstream 2318154 17089227 ~ 17089299 (+)

Expression


Co-expression Network