LOC113543594 (LOC108276641)


Basic Information

Item Value
gene id LOC113543594
gene name LOC108276641
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 15290550 ~ 15295056 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026941949.2
gttAAACTGTTTTTGTCGTCGTTTTGTGGTCCACCTGCCTCCCAAACCAACATACCAATCAATCCTGGCAGATTTATAACAGTGAAGGAGAGTATCGAGGGCAGACAAGACCACTCAGGCTCTGAGGGctgttattaaacattttcacactgacATACACATTTGAAGAGTACTGCTGCCAACTGCACAGAAACATCAGCGCTGAAGACAAAATGGACAGCCTTAGCAATAAAAAATATTTCTCTGTGTCGAATGAAAATGATGAAGATATAGACCTTGATGACTGGATACCTCCGGATGCTGATCTGATACAAAAGATGGTCTCTCAGATTGAATATTACCTCTCTGATGAGAATTTGGCTAAGGATGCTTTCCTTTTAAAGCATGTCAGAAGAAATAAGATGGGTTATGTCAATATCAAGTTGTTGACCTCTTTTAAAAAGATGAAGCAGTTCACAAAAGACTGGCGGGTCACAGCCTATGCCCTTAGGCATTCATTAGCACTAGAGGTAAACAAAGAGGGAAATAAAGTGCGTAGAATACATCCGGTGCCAGAGTCCATCCTCTTTCAGGTACCCAGCAGACTCCTGCTGGTCTGGAATGTCACAGAATCAAATCTGACAGAGGACATGGCACATGACACGTCAACACCTCACAAGAGCACCATGGAAACTGCTATTGAAATACTGGAGCCATTTGGCACCATCACCATGGCTCGGGTCAACCGGCCTGGCAGAGAGCTTCCACCCGAGCTTCAgaaatacagctacagataccCAGAGTTGTTCACTAAGGAGAGCGTACTAGTGGAATACGAAGATCTGGAAGGAGCTGGACGTGCTTACCACCAACTCTCACAGTCTGAAGGTAACATGAGAGTACTCCTGGTGGGGAAAGCTTCCAAGAAGAAAGCTGTGGATGTGGGTTTGGAGGACAGAAGTAACGGGAAGGGGATCTCCATCCTGAACCAGCGCATGTTACAGCTTCAGACTTGTGGTGAAGACTCCTCAGCATGCAGCTCCTCAGAATCAGAGTTCGCCTCCTCATCGCCTCTGAGCATCCCTCGTTTTTTCTCCAGCCAGGTGTGTGGCAGCCCCTTAAGTAGCCCACGTTCCAGCCCCAGATGTGTCCGTGCACCCATGCCAGGCCCTCGCATTTCACCACTCTTAGCCTCCGAGGTCTGGGGCAGTCCAGACACAAGTCCAGAGTTGCGAGACAAACGCAAGTTGTGTGCCACCCAAAACAAACACTGTCAGACGAGTGAAAAGAGGGCTCTAAATGGAGACACAGCGCCTCCTGGAGTCCTGCGTCTGCCTTATGGTCCTGATGGGAGTAGAGGTTTTCATGCAATCATAGTTAGAAAAAgacttcattattcattcaaaGTATAAGAAACCAATTATTTAGTTACAGTAATCAGGTGTTTGCTGTTTGTGCTGTGTATTACTTTGTCATTTGATTTGCTGACCTCTAaatgtaaagttgtgtgtaa
>XM_034312477.1
gttAAACTGTTTTTGTCGTCGTTTTGTGGTCCACCTGCCTCCCAAACCAACATACCAATCAATCCTGGGTAATTACTACCTACAACAGAACTCTgtgtttacattcatttttgATTTATAACAGTGAAGGAGAGTATCGAGGGCAGACAAGACCACTCAGGCTCTGAGGGctgttattaaacattttcacactgacATACACATTTGAAGAGTACTGCTGCCAACTGCACAGAAACATCAGCGCTGAAGACAAAATGGACAGCCTTAGCAATAAAAAATATTTCTCTGTGTCGAATGAAAATGATGAAGATATAGACCTTGATGACTGGATACCTCCGGATGCTGATCTGATACAAAAGATGGTCTCTCAGATTGAATATTACCTCTCTGATGAGAATTTGGCTAAGGATGCTTTCCTTTTAAAGCATGTCAGAAGAAATAAGATGGGTTATGTCAATATCAAGTTGTTGACCTCTTTTAAAAAGATGAAGCAGTTCACAAAAGACTGGCGGGTCACAGCCTATGCCCTTAGGCATTCATTAGCACTAGAGGTAAACAAAGAGGGAAATAAAGTGCGTAGAATACATCCGGTGCCAGAGTCCATCCTCTTTCAGGTACCCAGCAGACTCCTGCTGGTCTGGAATGTCACAGAATCAAATCTGACAGAGGACATGGCACATGACACGTCAACACCTCACAAGAGCACCATGGAAACTGCTATTGAAATACTGGAGCCATTTGGCACCATCACCATGGCTCGGGTCAACCGGCCTGGCAGAGAGCTTCCACCCGAGCTTCAgaaatacagctacagataccCAGAGTTGTTCACTAAGGAGAGCGTACTAGTGGAATACGAAGATCTGGAAGGAGCTGGACGTGCTTACCACCAACTCTCACAGTCTGAAGGTAACATGAGAGTACTCCTGGTGGGGAAAGCTTCCAAGAAGAAAGCTGTGGATGTGGGTTTGGAGGACAGAAGTAACGGGAAGGGGATCTCCATCCTGAACCAGCGCATGTTACAGCTTCAGACTTGTGGTGAAGACTCCTCAGCATGCAGCTCCTCAGAATCAGAGTTCGCCTCCTCATCGCCTCTGAGCATCCCTCGTTTTTTCTCCAGCCAGGTGTGTGGCAGCCCCTTAAGTAGCCCACGTTCCAGCCCCAGATGTGTCCGTGCACCCATGCCAGGCCCTCGCATTTCACCACTCTTAGCCTCCGAGGTCTGGGGCAGTCCAGACACAAGTCCAGAGTTGCGAGACAAACGCAAGTTGTGTGCCACCCAAAACAAACACTGTCAGACGAGTGAAAAGAGGGCTCTAAATGGAGACACAGCGCCTCCTGGAGTCCTGCGTCTGCCTTATGGTCCTGATGGGAGTAGAGGTTTTCATGCAATCATAGTTAGAAAAAgacttcattattcattcaaaGTATAAGAAACCAATTATTTAGTTACAGTAATCAGGTGTTTGCTGTTTGTGCTGTGTATTACTTTGTCATTTGATTTGCTGACCTCTAaatgtaaagttgtgtgtaa

Function

GO: NA

KEGG:

id description
K18733 LARP6; la-related protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026941949.2 False 1492 mRNA 0.46 4 15290550 15295056
XM_034312477.1 True 1534 mRNA 0.46 4 15290550 15295056

Neighbor

gene id symbol gene type direction distance location
marchf3 march3 coding upstream 20320 15245742 ~ 15270230 (+)
c17h5orf63 c16h5orf63 coding upstream 48292 15235268 ~ 15242258 (+)
LOC113543506 fbn2 coding upstream 247558 14979387 ~ 15042992 (+)
LOC113543667 LOC108277389 coding upstream 313023 14966170 ~ 14977527 (+)
LOC113543668 kiaa1024l coding upstream 368463 14919053 ~ 14922087 (+)
aldh7a1 aldh7a1 coding downstream 15085 15310141 ~ 15321553 (+)
LOC113543572 LOC108277262,LOC108424566,LOC105901058,LOC106603267,LOC105010780 coding downstream 142098 15437154 ~ 15462074 (+)
LOC113543573 NA coding downstream 167195 15462251 ~ 15473800 (+)
apbb1 apbb1 coding downstream 179273 15474329 ~ 15485123 (+)
LOC113543513 LOC108277159,LOC108427265 coding downstream 255869 15550925 ~ 15753891 (+)
G269635 lmnb1 non-coding upstream 1107 15279083 ~ 15289443 (+)
G269583 NA non-coding upstream 116058 15174268 ~ 15174492 (+)
G269569 NA non-coding upstream 133305 15128297 ~ 15157245 (+)
G269431 dact3 non-coding upstream 427544 14860755 ~ 14863006 (+)
G269396 NA non-coding upstream 504355 14785647 ~ 14786195 (+)
G269641 NA non-coding downstream 1488 15296544 ~ 15298327 (+)
G269642 phax non-coding downstream 4838 15299894 ~ 15304874 (+)
G269852 NA non-coding downstream 136988 15432044 ~ 15486563 (+)
G269989 NA non-coding downstream 627005 15922061 ~ 15929335 (+)
G269993 NA non-coding downstream 634386 15929442 ~ 15929868 (+)
vps36 vps36,LOC107701118 other upstream 519477 14762313 ~ 14771073 (+)
scaf4a scaf4,LOC107555128 other upstream 4408285 10865612 ~ 10882265 (+)
G266868 LOC108276566 other upstream 4719845 10569028 ~ 10570705 (+)
dclk1a dclk1,LOC107728871,LOC107577778 other upstream 5527853 9704360 ~ 9762697 (+)
LOC113543674 NA other upstream 5865695 9419665 ~ 9424855 (+)
trnar-ccu_11 NA other downstream 1792612 17087668 ~ 17087740 (+)
trnam-cau_40 NA other downstream 1792692 17087748 ~ 17087819 (+)
trnar-ccu_12 NA other downstream 1793393 17088449 ~ 17088521 (+)
trnam-cau_41 NA other downstream 1793473 17088529 ~ 17088600 (+)
trnar-ccu_13 NA other downstream 1794171 17089227 ~ 17089299 (+)

Expression


Co-expression Network