zar1l (zar1l)


Basic Information

Item Value
gene id zar1l
gene name zar1l
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 10039409 ~ 10041796 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026941963.2
GCAGTGTGCGCTTTAGCACCGAGAGACGCCATAAATAAGCAGCTGTGCTCACGCTATACTTATAGACACTAGATCGCGATGGAAGCCTTAACCTTTTCTGCATATAACTTCAGCGGCTATCCTGGCTATTTCCCCTTTTACCATGGGAACACTAAATTCAAACCCCAGAACTGGAACAAAAAGGGCAGTTTTGGTGTCATGCCCGAGATTCCTGACTATTTTGAAATCTACAAACGAGCTCAGTTAAAAGCTATCTTGTCTCAGGTCAACCCCAATTTAACTCCTCGCGTGCGCAAGGCTAACACCAGAGAGTTCGGGGTTCAGGTGAATCCCAAAGTAAACGCCACGGTGCAGTGCTCTCTGGGACCTAAAACGCTGTTTTATCGCGAGGATAAGTGGGAAGTGAAAGCCAGCAGTCCACTGAGAGCCAGTGTCCCCAGCACACCGGTCAACAGCGTGCGCTTCTCCCGTCCCGTTGCCATTTACTCGCCGGTGTTTGACCGCAGGTTCTTTTCAGTGCCAGCCCGCGCTGATGAACTTGACAGGGATGTGAAGCTGGGCAGCTCTGAGGAAGAAAACTGCGCAGCGGAAGTGGAGACGCGCGAGACCGAGGCGGGAAGCGCGCGGGGAAAAGAGCGTCAGTGCCCTGCTTTCCAAAGTCGCGCGCCCACAAGGTTTAACTTTCAGTTCCTGGAGCAGAAATATGGCTATTACCACTGCAGCAAGTGTAACATCCGCTGGGAGAGCGCGTACGTGTGGTGCATCTCCGGAACTTGCAAGGTGTACTTCAAGCAGCACTGCAGAAAGTGCCAGGCTGGCCTGAACCCATACAGAGTGGAGTCGATTCAGTGTCAGGTATGTGCACGGACACGCTGCTGCTGTGAGCGGAAGCAGAGGCACATTGACATTCGGCGTCCTCACCGCCAGGACCTGTGTGGCCGCTGCAAGGGCAAGAGGCTGTCCTGCGACACCACCTACAGCTTCAAATACATAGTCTGACTGTCTCTAACCAAATTTTTATAGTATTGTTGGCAATGAACTTTTGTATTGTATATCTATTAAACTCTGAATAAAAGGTACTGCAGCATTA
>XM_026941964.2
GCAGTGTGCGCTTTAGCACCGAGAGACGCCATAAATAAGCAGCTGTGCTCACGCTATACTTATAGACACTAGATCGCGATGGAAGCCTTAACCTTTTCTGCATATAACTTCAGCGGCTATCCTGGCTATTTCCCCTTTTACCATGGGAACACTAAATTCAAACCCCAGAACTGGAACAAAAAGGGCAGTTTTGGTGTCATGCCCGAGATTCCTGACTATTTTGAAATCTACAAACGAGCTCAGTTAAAAGCTATCTTGTCTCAGGTCAACCCCAATTTAACTCCTCGCGTGCGCAAGGCTAACACCAGAGAGTTCGGGGTTCAGGTGAATCCCAAAGTAAACGCCACGGTGCAGTGCTCTCTGGGACCTAAAACGCTGTTTTATCGCGAGGATAAGTGGGAAGTGAAAGCCAGCAGTCCACTGAGAGCCAGTGTCCCCAGCACACCGGTCAACAGCGTGCGCTTCTCCCGTCCCGTTGCCATTTACTCGCCGGTGTTTGACCGCAGGTTCTTTTCAGTGCCAGCCCGCGCTGATGAACTTGACAGGGATGTGAAGCTGGGCAGCTCTGAGGAAGAAAACTGCGCAGCGGAAGTGGAGACGCGCGAGACCGAGGCGGGAAGCGCGCGGGGAAAAGAGCGTCAGTGCCCTGCTTTCCAAAGTCGCGCGCCCACAAGGTTTAACTTTCAGTTCCTGGAGCAGAAATATGGCTATTACCACTGCAGCAAGTGTAACATCCGCTGGGAGAGCGCGTACGTGTGGTGCATCTCCGGAACTTGCAAGGTGTACTTCAAGCAGCACTGCAGAAAGTGCCAGGCTGGCCTGAACCCATACAGAGTGGAGTCGATTCAGTGTCAGTGATCCcatcaagcagcacaagcacaCCAGCAGGTTTCCTATTGGTCACAGTTTATTTTCTGCTCAGGTATGTGCACGGACACGCTGCTGCTGTGAGCGGAAGCAGAGGCACATTGACATTCGGC

Function

symbol description
zar1l Predicted to enable mRNA binding activity involved in posttranscriptional gene silencing. Predicted to be involved in translation. Predicted to be active in cytoplasm. Orthologous to human ZAR1L (zygote arrest 1 like).

NR:

description
ZAR1-like protein

GO: NA

KEGG:

id description
K18762 ZAR1; zygote arrest protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026941963.2 True 1090 mRNA 0.51 4 10039409 10041796
XM_026941964.2 False 980 mRNA 0.52 4 10039409 10041619

Neighbor

gene id symbol gene type direction distance location
rfc3 rfc3,LOC107589808,LOC107728889 coding upstream 19656 10014807 ~ 10019753 (+)
ccdc169 NA coding upstream 340091 9690378 ~ 9699318 (+)
sparta spg20 coding upstream 352416 9674854 ~ 9686993 (+)
ccna1 ccna1 coding upstream 367571 9669215 ~ 9671838 (+)
smad9 smad9 coding upstream 388278 9640731 ~ 9651131 (+)
hunk hunk,LOC108423838,LOC107691675,LOC107577711,LOC107734458,LOC104954747 coding downstream 190910 10232706 ~ 10241765 (+)
eva1c eva1c coding downstream 213779 10255575 ~ 10268750 (+)
slc46a3 slc46a3 coding downstream 260777 10302573 ~ 10320171 (+)
dchs1b LOC108277286,LOC108438972,LOC107718741,LOC107701146,LOC107555179,LOC105907404,LOC107720538,LOC107693876 coding downstream 311471 10353267 ~ 10448165 (+)
arfip2b arfip2b,LOC108276920,LOC108438961,LOC107718740,LOC107555180,LOC107701145,LOC107557232 coding downstream 443228 10485024 ~ 10505442 (+)
G266580 NA non-coding upstream 36048 10003146 ~ 10003361 (+)
G266499 stard13,LOC107691680 non-coding upstream 93830 9944113 ~ 9945579 (+)
G266497 NA non-coding upstream 99109 9937395 ~ 9940300 (+)
G266495 NA non-coding upstream 103196 9935989 ~ 9936213 (+)
G266416 NA non-coding upstream 272914 9764641 ~ 9766495 (+)
G266802 NA non-coding downstream 505025 10546821 ~ 10547182 (+)
G266869 NA non-coding downstream 530095 10571891 ~ 10572147 (+)
G266871 frem2a,LOC108276566,LOC107701139,LOC107555183,LOC107693873,LOC107718779,LOC107720635 non-coding downstream 539063 10580859 ~ 10581182 (+)
G266892 NA non-coding downstream 625022 10666818 ~ 10668314 (+)
G266901 NA non-coding downstream 690741 10732537 ~ 10734630 (+)
dclk1a dclk1,LOC107728871,LOC107577778 other upstream 276712 9704360 ~ 9762697 (+)
LOC113543674 NA other upstream 614554 9419665 ~ 9424855 (+)
G266161 NA other upstream 703119 9335801 ~ 9336290 (+)
LOC113534874 LOC108276751 other upstream 775298 9256943 ~ 9264111 (+)
G265807 LOC107756568 other upstream 1369612 8668814 ~ 8669797 (+)
G266868 LOC108276566 other downstream 527232 10569028 ~ 10570705 (+)
scaf4a scaf4,LOC107555128 other downstream 823816 10865612 ~ 10882265 (+)
vps36 vps36,LOC107701118 other downstream 4720517 14762313 ~ 14771073 (+)
trnar-ccu_11 NA other downstream 7045872 17087668 ~ 17087740 (+)
trnam-cau_40 NA other downstream 7045952 17087748 ~ 17087819 (+)

Expression


Co-expression Network