panx3 (panx3,LOC107747045,LOC107579026,LOC107686209,LOC107691702,LOC107589683)


Basic Information

Item Value
gene id panx3
gene name panx3,LOC107747045,LOC107579026,LOC107686209,LOC107691702,LOC107589683
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 12755403 ~ 12762340 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026941966.2
CTCACTCTTCATGACTcctctattatttttttaaaataaaagaacaagagCACAATTTACTACTCCATCAGACTCTAGAGAGTTCTATAACCCCTTTAATTACCCCTTAACCCTGTCCCATTTAACCTCCCATTTTGTTCGGCCCTCCTCCACTATTTAAAGTCTTCGCCAGCATCTTTGTCCTCCCCAGCCTCAGGACCAGGTCACCACTGCGTGGCATACTTAACATTCACTGCAGCAGGAGAACTGAAGTTGTGGACATGTCAATTGCTAAGACAGCTGCACAGGCTGTGCTGTCTGATGCCCTGCTTCAGAACAGTAATGTAGACAACCGCATTCGTCACCTGGAACTGGAGCTGCCCTTAGACAAACTCATCAAAATTGTATCCGTGGGACTTCCTCTAATGCTGGTGTCTTTGGCATTTGCTCGAGAGATCTCAGTtggtGCACAGGTTAGTTGTTTTCCTCCCAGCAACTTCACAGCGAAGCAAGCTGCGTATGTAGACACATATTGCTGGGATTCACTGATGCACCATGAGTTTGATGCGGATGGAAACTCTGAAGAACGTTCACTGTGGGTTCATAAGatgTTCCCCTACTCCCTGCTGATTATGGCAATGATGATGTACCTTCCAGCTCTGATCTGGAAGTTCCTGGCTATGCCAACCCTGGGCTCCGATCTGCTCTTTACAATTGATGAGCTGGACAAGTCTTACAACCGCTCGGTGCGCTTGGCTCAGAGCATCGTGGAGCTTAAACAGAATACAGACCCATATGAATTTCAGGCAGAGTTGCATagAGCCAAGAGGAAACGTTACTTTGAGTACCCTCTGCTGGAGAGATACATGCAATACAAGCATGGCTCCTACTTCCTGGTCAGCATGCTGTTCCTGCGTGGCTTCCTCTTGCTTACTTTCATGTCGGCTTCCTGTCTCTACCTGGTCTACTTCCACCTCTCAGCCTTCCTTCAAGATGAGTTCAGCTGCTTTATGCGTACCGGGATCCTCCAAGACCAGGTCTGGGTTCCCACGCTGGTGCAGTGCAAGATCAGCGGCCTGATGGTGTTTCAGGTCATTAGCATAGCTAATGGTGCCATCTACGTGCTGCTGGGGCCCATTGTCCTGTTCAGCCTGCTGCGCCTTTTCTGCTGGGACACCAGCTTCCTCTCGCTGTATGAGGTGCTTCCTGCTCTGGGGCTCATCAGTGGTCAGAAACTAGGCTGCCCGTTGAATGACTTGAACGTGCTTCTCCTCTTCCTGCGCACTAACGTGACACAGCTGCACTCGTACGGTCGACTCAAGGCCTTGTGCTCGCTAGCGCCGCCTCATTTGCGCAGGGGTAAGGGCATGCTGACAGAGGAGCAGGTTGAGGAAGCTGCTGAAGCAGctgaggagctggaggaggagatACAGGAGGCCAGAGAAGAGGGCAAACACAATCTAGTGGATATCATGACCATGCTTGGGGCAGCCAGAGGGAATGTAGTGAACTGCCCTGAGCAGCGCCCTCTGGTGGAGGAGAACATGACACTCGAACCTAACCACCAGGGCTACCATGAACTGGAGGAGTCTACATCATGTTGTTTTGGCTAAGCCCTCCACTAATGGACTGAACCATCGCTGTGAGGGACACATAGTATTGACCATAGACTAATCATATCCCTTCTAGACTAGAAATAGGTCTAACCCAGATTGATTAATGGAGCTTTTTCATTGGCAGTTCTTTTATTGGATCAGGATCAAGTATATTGGTGGTCTGTCACAGCAAATCCTTGTACACCAAAGTGCTTCAAGAATCTCCAGGAACCCTTCAAAAAGCCTCCATTAGAATTCTGTATGTGAAGCTTGTCTTGATTGTTTATACTTTCATTGTTTCTGTATCTGTTATAAATCCTTCTCTTTTTGTGTGAAATATTGTAAGATTTTGTTCATGATTAAACCATTACTTGAC

Function

symbol description
panx3 Predicted to enable wide pore channel activity. Acts upstream of or within cranial skeletal system development and ossification. Predicted to be located in gap junction and membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in several structures, including dermal bone; eye; heart; liver; and pleuroperitoneal region. Orthologous to human PANX3 (pannexin 3).

NR:

description
PREDICTED: pannexin-3-like isoform X1

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0005921 gap junction cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K20857 PANX2_3; pannexin 2/3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026941966.2 True 1950 mRNA 0.48 7 12755403 12762340

Neighbor

gene id symbol gene type direction distance location
pknox2 pknox2,LOC107691639 coding upstream 1096 12680756 ~ 12754307 (+)
robo3 robo3 coding upstream 124668 12478623 ~ 12630735 (+)
fez1 fez1,LOC107691643,LOC107751387 coding upstream 362746 12379691 ~ 12392657 (+)
vps26bl v26bl,LOC108423787,LOC107588734,LOC107751386,LOC107691644,LOC105024202 coding upstream 381398 12365051 ~ 12374005 (+)
picalma picalm,picalma,LOC107744613,LOC107699270 coding upstream 407044 12307333 ~ 12348359 (+)
opcml opcml,LOC108277316,LOC108423784,LOC107686109,LOC107746995,LOC107588660,LOC107577150,LOC107691701,LOC107751394 coding downstream 51460 12813800 ~ 13030680 (+)
LOC113543571 NA coding downstream 553598 13315938 ~ 13316216 (+)
bsx bsx,LOC107747047,LOC107589660,LOC107751411,LOC107579003 coding downstream 686393 13448733 ~ 13450793 (+)
pwp1 pwp1,LOC105905702 coding downstream 728989 13491329 ~ 13493117 (+)
zpr1 zpr1,LOC107693980,LOC107747003 coding downstream 732381 13494721 ~ 13503387 (+)
G267801 LOC107739129 non-coding upstream 232882 12522186 ~ 12522521 (+)
G267499 NA non-coding upstream 323593 12431084 ~ 12431810 (+)
G267429 NA non-coding upstream 744114 11981181 ~ 12011289 (+)
G267381 NA non-coding upstream 886740 11863887 ~ 11868663 (+)
G267362 NA non-coding upstream 926585 11828569 ~ 11828818 (+)
G268027 NA non-coding downstream 3813 12766153 ~ 12766367 (+)
G268580 hspa8,LOC107577128,LOC100125490,LOC108423781,LOC107691633,LOC108277936,LOC107597532 non-coding downstream 670394 13432734 ~ 13475498 (+)
G268587 NA non-coding downstream 758812 13521152 ~ 13526385 (+)
LOC117599363 NA non-coding downstream 1097456 13859796 ~ 13863635 (+)
LOC117599376 NA non-coding downstream 1180345 13942685 ~ 13947023 (+)
scaf4a scaf4,LOC107555128 other upstream 1873138 10865612 ~ 10882265 (+)
G266868 LOC108276566 other upstream 2184698 10569028 ~ 10570705 (+)
dclk1a dclk1,LOC107728871,LOC107577778 other upstream 2992706 9704360 ~ 9762697 (+)
LOC113543674 NA other upstream 3330548 9419665 ~ 9424855 (+)
G266161 NA other upstream 3419113 9335801 ~ 9336290 (+)
vps36 vps36,LOC107701118 other downstream 1999973 14762313 ~ 14771073 (+)
trnar-ccu_11 NA other downstream 4325328 17087668 ~ 17087740 (+)
trnam-cau_40 NA other downstream 4325408 17087748 ~ 17087819 (+)
trnar-ccu_12 NA other downstream 4326109 17088449 ~ 17088521 (+)
trnam-cau_41 NA other downstream 4326189 17088529 ~ 17088600 (+)

Expression


Co-expression Network