med11 (med11,LOC107720680,LOC107676028)


Basic Information

Item Value
gene id med11
gene name med11,LOC107720680,LOC107676028
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 13826792 ~ 13831196 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026941975.2
TGTCCTACTCGGCTTGCCGTAACTCGAGTGAACCTTTGTGGTTGTTACCctggatgttttcttttttaattgtttgataGCTTTTTATTCCAGATAAAACTAGTTTCACCTCGTCCTAAAGTAGAAATGCGACACTAGAGAGCTGCAAAATGGCTAATGACAGGTTACGGGCTCTGGAGGATGTGGAAAAGGAGATTGCTGTCGTTCTTCAGTGTGCAGGAAACATAGTGAtggagttgtccagggagaagCATAATGCAAGCTTATTAGAGCGGCAGCTCAACCAGTTTCAAACCTCCATTAACAGGATTGAGAGTGAGCTCAGCTCTCAGATCCGCTATCTCACACAGGTGGCGACTGGTCAGCCTCACGAAGGCTCGACGTACTCGGCAAGAAAGGACTGCCAGATGGCCCTGAACCGTGCAGAATACGCCCGTGTCAAACTGGGAGAACTAAGACGCACCTGTGAGATGATGCTCGACCCCCAGACATGATGAATCTCATGtattcatcacagttttattGGAAATGTAGTAGCATAACATCTAGATTTAGCCAGAGTCTCAAGAAAATATTGCTGAAGAATTTTGAACCTTGGCTTTGTGAGAAATCTCACTTTTGTGAAGCACGTATCTGTCTACAGACTGCCAAGGGAAACTTTGAATTTGTGCTACTTTCTATGAGGGTAGGGTTTTTCTAGTTgaagcttttttccccaaaatatcATGTATTATCATGTTGTATAAAGAAAACACCTTACTTTTTTTAAGTGACTTCTCACTGTTttgtaacaaataaataaaagggtttttttctgtgtttaaa

Function

symbol description
med11 Predicted to enable transcription coregulator activity. Predicted to act upstream of or within regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of mediator complex. Orthologous to human MED11 (mediator complex subunit 11).

NR:

description
PREDICTED: mediator of RNA polymerase II transcription subunit 11

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0016592 mediator complex cellular_component

KEGG:

id description
K15131 MED11; mediator of RNA polymerase II transcription subunit 11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026941975.2 True 825 mRNA 0.42 4 13826792 13831196

Neighbor

gene id symbol gene type direction distance location
arrb2a arrb2,LOC100335038,LOC106567894,LOC105023937 coding upstream 3954 13811706 ~ 13822838 (+)
tmem126a t126a,tmem126a coding upstream 41888 13782347 ~ 13784904 (+)
LOC113543629 NA coding upstream 276601 13547337 ~ 13550191 (+)
ift46 ift46 coding upstream 279567 13540562 ~ 13547225 (+)
vps11 vps11,LOC107744603 coding upstream 286900 13529335 ~ 13539892 (+)
c17h17orf49 cq049,LOC108424543,LOC105902403 coding downstream 2231 13833427 ~ 13838079 (+)
si:dkey-175g6.2 LOC108276627 coding downstream 53265 13884461 ~ 13889981 (+)
slc25a1a slc25a1a,LOC108276564,LOC108424536,LOC107586170,LOC107708615,LOC107720673,LOC107554324 coding downstream 68368 13899564 ~ 13904855 (+)
ltn1 ltn1 coding downstream 82812 13914008 ~ 13939043 (+)
paxbp1 paxbp1 coding downstream 803295 14634491 ~ 14654548 (+)
G268587 NA non-coding upstream 300407 13521152 ~ 13526385 (+)
G268580 hspa8,LOC107577128,LOC100125490,LOC108423781,LOC107691633,LOC108277936,LOC107597532 non-coding upstream 351294 13432734 ~ 13475498 (+)
G268027 NA non-coding upstream 1060425 12766153 ~ 12766367 (+)
G267801 LOC107739129 non-coding upstream 1304271 12522186 ~ 12522521 (+)
G267499 NA non-coding upstream 1394982 12431084 ~ 12431810 (+)
LOC117599363 NA non-coding downstream 28600 13859796 ~ 13863635 (+)
LOC117599376 NA non-coding downstream 111489 13942685 ~ 13947023 (+)
G269251 NA non-coding downstream 724290 14555486 ~ 14556349 (+)
G269268 NA non-coding downstream 765768 14596964 ~ 14597818 (+)
LOC117599336 NA non-coding downstream 767411 14598607 ~ 14604363 (+)
scaf4a scaf4,LOC107555128 other upstream 2944527 10865612 ~ 10882265 (+)
G266868 LOC108276566 other upstream 3256087 10569028 ~ 10570705 (+)
dclk1a dclk1,LOC107728871,LOC107577778 other upstream 4064095 9704360 ~ 9762697 (+)
LOC113543674 NA other upstream 4401937 9419665 ~ 9424855 (+)
G266161 NA other upstream 4490502 9335801 ~ 9336290 (+)
vps36 vps36,LOC107701118 other downstream 931117 14762313 ~ 14771073 (+)
trnar-ccu_11 NA other downstream 3256472 17087668 ~ 17087740 (+)
trnam-cau_40 NA other downstream 3256552 17087748 ~ 17087819 (+)
trnar-ccu_12 NA other downstream 3257253 17088449 ~ 17088521 (+)
trnam-cau_41 NA other downstream 3257333 17088529 ~ 17088600 (+)

Expression


Co-expression Network