c17h5orf63 (c16h5orf63)


Basic Information

Item Value
gene id c17h5orf63
gene name c16h5orf63
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 15235268 ~ 15242258 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026941988.2
CAGGAAGATGATTGCCAGCTCTGTTGACCAATGAGCTACTACATTTAACAGGAAGTGCTGTTTTTGCAGCAAGCCACGCCCCTCATTTCATGCACTAGATCATGTGCGCTTAAGACATGTTCACACTACTTCCAAAACTTCTTCACCACATAAAAACTCCCTCTCGATTCATCAGGACCTCTTGTTCACAGAGGTCTTTACCTATTTTAACTCTCTTCACAAAGGATCCATGTCCCTTGTGTGATGAAGCAAAAGAAGTGCTTGAACCATATAAACATAGGTTTGTATTGCAGGAGGTTGACATTACTCTTCCTGAGAACAGTGTGTGGTTTGACAGATACAAGTACGACATCCCAGTGTTTCATCTGAATGGACAGTTTTTGATGATGCATCGTGTGAACACAGAAGTCCTGGAAATGCGGCTGGCCAAATCAGAGAAAGAATCAGTTTAATTATTCTCAAATATTGCATAAACCTGTAATATTCTGTAACGTTTTTGGTGAGAAGTAACTCTATTGCCTCAGTTTTTGTGCTTGATTGGtattttgttgggttttttgtaattaaatatatcattattgttaaatatatatggaaaataaaatattgagttGTGGGTACTGGTGAAGGATGAGGAATACCACTACTGTAATCTGTAAGTAGTTGTTATCTTAATGGATTCAGAGCTTGACCTAGGATTAACCAAGATGATATAGTGGTGAAATGGATATAGATATGGAAATGATCAAGAGTGGTCTTAGtgatttgttaaaaatgtttggaCTGCCATTatataaaaaagattttcagACTACAAGACACATAATCTGCCATTTCAGAAAAAGTacataagtaaatataaatcattaaaaaaatttaaaaaaaa
>XM_026941989.2
GAAAGGGTAGTCAGTAAAGTCATTGACATGTTTTGCTCTTGCTGTTGGATATTTAAAATGTCGGAATAGAGTATATGATATTGTCTTAAACACCTGGGGCAAGTTTGtgtctgtttcatttttgttggaCGCAGCGCGGTgctaaaattatttcttttacacGTACTATTGATGAAAGTATTATTAATTCTATAAattttactgttactgtaagTTTAGTTAAATTTACACATACCACGCTACTCGTGCTGAAGTCTGTAACGACCCGGAAGTGATTGAATCCACGTGGACATGTTCACACTACTTCCAAAACTTCTTCACCACATAAAAACTCCCTCTCGATTCATCAGGACCTCTTGTTCACAGAGGTCTTTACCTATTTTAACTCTCTTCACAAAGGATCCATGTCCCTTGTGTGATGAAGCAAAAGAAGTGCTTGAACCATATAAACATAGGTTTGTATTGCAGGAGGTTGACATTACTCTTCCTGAGAACAGTGTGTGGTTTGACAGATACAAGTACGACATCCCAGTGTTTCATCTGAATGGACAGTTTTTGATGATGCATCGTGTGAACACAGAAGTCCTGGAAATGCGGCTGGCCAAATCAGAGAAAGAATCAGTTTAATTATTCTCAAATATTGCATAAACCTGTAATATTCTGTAACGTTTTTGGTGAGAAGTAACTCTATTGCCTCAGTTTTTGTGCTTGATTGGtattttgttgggttttttgtaattaaatatatcattattgttaaatatatatggaaaataaaatattgagttGTGGGTACTGGTGAAGGATGAGGAATACCACTACTGTAATCTGTAAGTAGTTGTTATCTTAATGGATTCAGAGCTTGACCTAGGATTAACCAAGATGATATAGTGGTGAAATGGATATAGATATGGAAATGATCAAGAGTGGTCTTAGtgatttgttaaaaatgtttggaCTGCCATTatataaaaaagattttcagACTACAAGACACATAATCTGCCATTTCAGAAAAAGTacataagtaaatataaatcattaaaaaaatttaaaaaaaa
>XM_034312505.1
tgttcctgggatccaCCTCCACCCCGATAAGGATAAAGCGTGTGAGGGAATGAGTGAGTAAGAGCATCCTGGACTGTCTCATACATCCCTGGGCCTAGTGAACCTCTGTTCGACATGTTCACACTACTTCCAAAACTTCTTCACCACATAAAAACTCCCTCTCGATTCATCAGGACCTCTTGTTCACAGAGGTCTTTACCTATTTTAACTCTCTTCACAAAGGATCCATGTCCCTTGTGTGATGAAGCAAAAGAAGTGCTTGAACCATATAAACATAGGTTTGTATTGCAGGAGGTTGACATTACTCTTCCTGAGAACAGTGTGTGGTTTGACAGATACAAGTACGACATCCCAGTGTTTCATCTGAATGGACAGTTTTTGATGATGCATCGTGTGAACACAGAAGTCCTGGAAATGCGGCTGGCCAAATCAGAGAAAGAATCAGTTTAATTATTCTCAAATATTGCATAAACCTGTAATATTCTGTAACGTTTTTGGTGAGAAGTAACTCTATTGCCTCAGTTTTTGTGCTTGATTGGtattttgttgggttttttgtaattaaatatatcattattgttaaatatatatggaaaataaaatattgagttGTGGGTACTGGTGAAGGATGAGGAATACCACTACTGTAATCTGTAAGTAGTTGTTATCTTAATGGATTCAGAGCTTGACCTAGGATTAACCAAGATGATATAGTGGTGAAATGGATATAGATATGGAAATGATCAAGAGTGGTCTTAGtgatttgttaaaaatgtttggaCTGCCATTatataaaaaagattttcagACTACAAGACACATAATCTGCCATTTCAGAAAAAGTacataagtaaatataaatcattaaaaaaatttaaaaaaaa
>XM_034312506.1
GAAAGGGTAGTCAGTAAAGTCATTGACATGTTTTGCTCTTGCTGTTGGATATTTAAAATGTCGGAATAGAGTATATGATATTGTCTTAAACACCTGGGGCAAGTTTGtgtctgtttcatttttgttggaCGCAGCGCGGTgctaaaattatttcttttacacGTACTATTGATGAAAGTATTATTAATTCTATAAattttactgttactgtaagTTTAGTTAAATTTACACATACCACGCTACTCGTGCTGAAGTCTGTAACGACCCGGAAGTGATTGAATCCACACATGTTCACACTACTTCCAAAACTTCTTCACCACATAAAAACTCCCTCTCGATTCATCAGGACCTCTTGTTCACAGAGGTCTTTACCTATTTTAACTCTCTTCACAAAGGATCCATGTCCCTTGTGTGATGAAGCAAAAGAAGTGCTTGAACCATATAAACATAGGTTTGTATTGCAGGAGGTTGACATTACTCTTCCTGAGAACAGTGTGTGGTTTGACAGATACAAGTACGACATCCCAGTGTTTCATCTGAATGGACAGTTTTTGATGATGCATCGTGTGAACACAGAAGTCCTGGAAATGCGGCTGGCCAAATCAGAGAAAGAATCAGTTTAATTATTCTCAAATATTGCATAAACCTGTAATATTCTGTAACGTTTTTGGTGAGAAGTAACTCTATTGCCTCAGTTTTTGTGCTTGATTGGtattttgttgggttttttgtaattaaatatatcattattgttaaatatatatggaaaataaaatattgagttGTGGGTACTGGTGAAGGATGAGGAATACCACTACTGTAATCTGTAAGTAGTTGTTATCTTAATGGATTCAGAGCTTGACCTAGGATTAACCAAGATGATATAGTGGTGAAATGGATATAGATATGGAAATGATCAAGAGTGGTCTTAGtgatttgttaaaaatgtttggaCTGCCATTatataaaaaagattttcagACTACAAGACACATAATCTGCCATTTCAGAAAAAGTacataagtaaatataaatcattaaaaaaatttaaaaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026941988.2 False 886 mRNA 0.35 4 15238810 15242258
XM_026941989.2 True 1061 mRNA 0.34 4 15238930 15242258
XM_034312505.1 False 884 mRNA 0.36 4 15235268 15242258
XM_034312506.1 False 1057 mRNA 0.34 4 15238930 15242258

Neighbor

gene id symbol gene type direction distance location
LOC113543506 fbn2 coding upstream 192276 14979387 ~ 15042992 (+)
LOC113543667 LOC108277389 coding upstream 257741 14966170 ~ 14977527 (+)
LOC113543668 kiaa1024l coding upstream 313181 14919053 ~ 14922087 (+)
zgc:171929 ovol2,LOC108277324,LOC107746622,LOC107690845,LOC107575147,LOC107671611,LOC107386354 coding upstream 410474 14821863 ~ 14824794 (+)
tpte tpte2,tpte,LOC108276937,LOC107718790,LOC107701101,LOC107720658,LOC108410538 coding upstream 439194 14788906 ~ 14796074 (+)
marchf3 march3 coding downstream 3484 15245742 ~ 15270230 (+)
LOC113543594 LOC108276641 coding downstream 48292 15290550 ~ 15295056 (+)
aldh7a1 aldh7a1 coding downstream 67883 15310141 ~ 15321553 (+)
LOC113543572 LOC108277262,LOC108424566,LOC105901058,LOC106603267,LOC105010780 coding downstream 194896 15437154 ~ 15462074 (+)
LOC113543573 NA coding downstream 219993 15462251 ~ 15473800 (+)
G269583 NA non-coding upstream 60776 15174268 ~ 15174492 (+)
G269569 NA non-coding upstream 78023 15128297 ~ 15157245 (+)
G269431 dact3 non-coding upstream 372262 14860755 ~ 14863006 (+)
G269396 NA non-coding upstream 449073 14785647 ~ 14786195 (+)
G269393 NA non-coding upstream 451583 14782961 ~ 14783685 (+)
G269635 lmnb1 non-coding downstream 36825 15279083 ~ 15289443 (+)
G269641 NA non-coding downstream 54286 15296544 ~ 15298327 (+)
G269642 phax non-coding downstream 57636 15299894 ~ 15304874 (+)
G269852 NA non-coding downstream 189786 15432044 ~ 15486563 (+)
G269989 NA non-coding downstream 679803 15922061 ~ 15929335 (+)
vps36 vps36,LOC107701118 other upstream 464195 14762313 ~ 14771073 (+)
scaf4a scaf4,LOC107555128 other upstream 4353003 10865612 ~ 10882265 (+)
G266868 LOC108276566 other upstream 4664563 10569028 ~ 10570705 (+)
dclk1a dclk1,LOC107728871,LOC107577778 other upstream 5472571 9704360 ~ 9762697 (+)
LOC113543674 NA other upstream 5810413 9419665 ~ 9424855 (+)
trnar-ccu_11 NA other downstream 1845410 17087668 ~ 17087740 (+)
trnam-cau_40 NA other downstream 1845490 17087748 ~ 17087819 (+)
trnar-ccu_12 NA other downstream 1846191 17088449 ~ 17088521 (+)
trnam-cau_41 NA other downstream 1846271 17088529 ~ 17088600 (+)
trnar-ccu_13 NA other downstream 1846969 17089227 ~ 17089299 (+)

Expression


Co-expression Network