Item | Value |
---|---|
gene id | grik1a |
gene name | grik1,grik1a,LOC107555187,LOC107701130,LOC107718733,LOC107693913 |
gene type | coding |
species | striped catfish (Pangasianodon hypophthalmus) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_047611.1 |
NCBI id | CM018557.1 |
chromosome length | 24879021 |
location | 10978094 ~ 11035327 (+) |
genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
symbol | description |
---|---|
grik1a | Predicted to enable glutamate receptor activity and transmitter-gated ion channel activity involved in regulation of postsynaptic membrane potential. Predicted to be involved in glutamatergic synaptic transmission and modulation of chemical synaptic transmission. Predicted to act upstream of or within ion transport. Predicted to be located in membrane and synapse. Predicted to be integral component of membrane. Predicted to be active in postsynaptic membrane. Human ortholog(s) of this gene implicated in childhood absence epilepsy. Orthologous to human GRIK1 (glutamate ionotropic receptor kainate type subunit 1). |
grik1 | Enables kainate selective glutamate receptor activity. Predicted to be involved in glutamatergic synaptic transmission and modulation of chemical synaptic transmission. Predicted to act upstream of or within several processes, including chemical synaptic transmission; modulation of chemical synaptic transmission; and positive regulation of gamma-aminobutyric acid secretion. Predicted to be located in dendrite; postsynaptic density; and presynaptic membrane. Predicted to be part of kainate selective glutamate receptor complex. Predicted to be active in glutamatergic synapse and postsynaptic membrane. Predicted to be integral component of presynaptic membrane. Implicated in childhood absence epilepsy. |
description |
---|
unnamed protein product |
id | description |
---|---|
K05201 | GRIK1; glutamate receptor, ionotropic kainate 1 |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_026941998.2 | False | 3341 | mRNA | 0.48 | 17 | 10978095 | 11035327 |
XM_026941999.2 | False | 3224 | mRNA | 0.48 | 16 | 10978095 | 11035327 |
XM_034312910.1 | False | 3387 | mRNA | 0.48 | 18 | 10978094 | 11035327 |
XM_034312911.1 | False | 3270 | mRNA | 0.48 | 17 | 10978094 | 11035327 |
XM_034312912.1 | False | 3126 | mRNA | 0.49 | 18 | 10978095 | 11035014 |
XM_034312913.1 | True | 3479 | mRNA | 0.48 | 19 | 10978094 | 11035327 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
tiam1a | tiam1,LOC108423828 | coding | upstream | 2998 | 10914702 ~ 10975096 (+) |
sod1 | sod1 | coding | upstream | 87530 | 10884276 ~ 10890564 (+) |
postna | postn | coding | upstream | 166330 | 10776302 ~ 10811764 (+) |
trpc4a | trpc4,LOC108423767 | coding | upstream | 218378 | 10738302 ~ 10759716 (+) |
trim3b | trim3b,LOC108276924,LOC108423836,LOC107701140,LOC107557229,LOC107720632,LOC107718737 | coding | upstream | 423843 | 10520018 ~ 10554251 (+) |
cct8 | cct8,LOC107693911 | coding | downstream | 39328 | 11074655 ~ 11083609 (+) |
tmem135 | tmem135,LOC107701128,LOC107718730,LOC107693910,LOC107720646 | coding | downstream | 48702 | 11084029 ~ 11098340 (+) |
LOC113543610 | LOC100304491,LOC108423765 | coding | downstream | 112268 | 11147595 ~ 11151753 (+) |
kpna7 | kpna7,LOC108277302,LOC108423764,LOC103041448,LOC107693907,LOC107720648,LOC107556882 | coding | downstream | 116748 | 11152075 ~ 11155690 (+) |
LOC113543473 | LOC108276550 | coding | downstream | 131810 | 11167137 ~ 11219048 (+) |
G266946 | NA | non-coding | upstream | 158355 | 10819526 ~ 10819739 (+) |
G266901 | NA | non-coding | upstream | 243464 | 10732537 ~ 10734630 (+) |
G266892 | NA | non-coding | upstream | 309780 | 10666818 ~ 10668314 (+) |
G266871 | frem2a,LOC108276566,LOC107701139,LOC107555183,LOC107693873,LOC107718779,LOC107720635 | non-coding | upstream | 396912 | 10580859 ~ 10581182 (+) |
G266869 | NA | non-coding | upstream | 405947 | 10571891 ~ 10572147 (+) |
G267051 | NA | non-coding | downstream | 671 | 11035998 ~ 11036230 (+) |
G267062 | NA | non-coding | downstream | 6890 | 11042217 ~ 11042390 (+) |
G267070 | NA | non-coding | downstream | 21285 | 11056612 ~ 11057021 (+) |
G267090 | NA | non-coding | downstream | 50921 | 11086248 ~ 11087863 (+) |
G267103 | NA | non-coding | downstream | 76059 | 11111386 ~ 11111597 (+) |
scaf4a | scaf4,LOC107555128 | other | upstream | 95829 | 10865612 ~ 10882265 (+) |
G266868 | LOC108276566 | other | upstream | 407389 | 10569028 ~ 10570705 (+) |
dclk1a | dclk1,LOC107728871,LOC107577778 | other | upstream | 1215397 | 9704360 ~ 9762697 (+) |
LOC113543674 | NA | other | upstream | 1553239 | 9419665 ~ 9424855 (+) |
G266161 | NA | other | upstream | 1641804 | 9335801 ~ 9336290 (+) |
vps36 | vps36,LOC107701118 | other | downstream | 3726986 | 14762313 ~ 14771073 (+) |
trnar-ccu_11 | NA | other | downstream | 6052341 | 17087668 ~ 17087740 (+) |
trnam-cau_40 | NA | other | downstream | 6052421 | 17087748 ~ 17087819 (+) |
trnar-ccu_12 | NA | other | downstream | 6053122 | 17088449 ~ 17088521 (+) |
trnam-cau_41 | NA | other | downstream | 6053202 | 17088529 ~ 17088600 (+) |