tmem135 (tmem135,LOC107701128,LOC107718730,LOC107693910,LOC107720646)


Basic Information

Item Value
gene id tmem135
gene name tmem135,LOC107701128,LOC107718730,LOC107693910,LOC107720646
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 11084029 ~ 11098340 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942003.2
AGCGCGCGTCCCCGCGCTCTTCAGTAAACATGGCTGCTCTCAGCAAGTCCATACCGCACAACTGCTATGAGATAGGACATACATGGAGCCCATCATGCACAATTTCAGCACTGCAAGTCACAGCCGGGGCTCTGGAGGCCTCTCTCAAAATATACGCACCACTATATCTAATTGCAGCTATCctaagaagaaggaaaaaagactACTACAAGAAGAGACTCCTCCCTGAAATCCTGCAGTCTGTGTCATTTCTGACTACAAATGGAGGCCTGTACATCGCCTTTTTCTGCCTTCTTAGGAAGCTGCTGGGCCGTTTCTACTCCTGGTCGGCAGGCTTTGGAGCAGCACTGCCAGCTTCGTACATCGCTATTCTGATAGAGCGCAAAAGCAGGAGAGGACTTTTAACAATATATATGGCAAACTTGGCAACTGAGACAGTATTTCGGATGGCTGTCACACGAGGCATCATTAACCCTTTAAAACATGGAGAGGTTCTCCTTTTCTGTATTACTGCGTCactttacatgtttttcttcagaAGTAAAGATGGACTTAAGGGTTTTGCGTTCTCAGCATTAAAGTTTATTGTAGGGAAGGAGGAAATCCCCACACATTCCAGCCTTGCTGAGCTGCCCAGTGCGTCTCGCTCAGAAAGGCCAGCTTTACCTCCAACAGACGCGGAACAGCCTTCGTCCTCTCGAAGGACCATCACTGCTCTGACTCGCAGGCTGCTAGACTCTCTATGTAAACACGGACCCAGACATAGGTGTTGCAAACACTACCAAGACAACTGCATCTCCTACTGCATCAAAggATTCATCCGCATGTTTAGCGTGGGTTACCTCATCCAGTGCTGTTTGAAGGTTCCATCAGCATTTAGGCACGTTTTCACCAAACCCTCTCGTCTTCTATCACTACTCTACAACAAGGAGAATTTCCAACTAGGAGCCTTTCTCGGTTCTTTCGTCAGCATTTACAAGGGAACCAGCTGTTTCCTTAGGTGGGTGCGTAACCTCGATGATGAGCTCCATGCGCTTATAGCAGGTTTTCTCGCCGGCATCTCCATGTTCTTCTATAAGAGCACCACCATCTCAATGTATCTCTTTTCCAAGCTTGTGGAGACCATGTACTTCAAAGGCATCGAGGCAGGACACTTCCCCTACTTCCCTAATTCTGACACAGTAATCTATGCCGTCTCAACTGCCATCTGCTTCCAGGCCGCGGTAATGGAAGTGCAGAATCTGCGACCATCATACTGGAAGTTTCTTCTGCGACTGACCAAGGGCAGgTTTGCTCTGATGAACAGAAAAGTGCTGGATGTGTTTGGGACTGAGGCTTCTAGACACTTTAAAGACTTCACTCCCAAACTGGACCCCAGATACACACTGTTTGCTCAAGATGCAGACATGCAGCTGAGTTAACAAGCCATGGAGACCACGGGAGTGACCACCCAGACAGCTCTTTCAACAAATAATGTGAATGGCATTGCATTGGTTGCTAGTACAAAATTCTGGCATTGCCCAGCagcagtattaaatcctcataTCCACTCATAATCCTTGGAATTTAATTGGAACTATTTCTCACCAGAGTTAAACAGATTGAAATGTTGCCAGAATTAAGGGTTCTTTACTTTTTATGCCAGTAGGTATAAAGCTTCTCATCATTCAGTCATTACAATTGTGGTGTTGAGACCATAATTTTTATTCTAGTTGAAATTATGAAAATCTGACATAATGCCTTAATTTCAGCTGTGATTTTAAACTAGAATGCTTAGAGACAAAAGAATGTGTAACACTATTCTAACTATATTCTATGGAACAATCTGGACTTTCATTTGCTCAAGTCACCGTGTGTGAGCAAATGTACATCAGCCATGTGTTTTTGAAAAGAATCAGGTTTCCTCTGTACTGGAATTAAACTTTTTATGTTAGAAAACTTACTGATATTTTCTGAAGTACATAAAACATTGCTGAAAGCGTTCAGGGGAGAAAAGTAACAGTTTAAGTTGAACGCTACTTGCCCAAGCTACTTGATATGCACTGATGGAGTACATGCTCTGGATAGAAAGCAGGTTCGTATAGTGAAACACATAGAATATGTGTATAATTATAGAAACAGTACAGTAGCAcagattttctttaattttaataaacatgtagTGATTATATATGTAATCAAAATATTATACTTGTGTGAAActttaatttatgtaaaattgttgctgtttaatataaaaagaatttatattaaaatgtcttCCACTGTATTTCTGTGGTTAGTTTAATGTCCTTCTGAACAGTAAACTAACTCAAAATGTAGTAAAAACTTACTAGGCAAATGCCTTCCAGATTTAATTAAAggtccatatttttttt

Function

symbol description
tmem135 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in female organism. Orthologous to human TMEM135 (transmembrane protein 135).

NR:

description
PREDICTED: transmembrane protein 135

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942003.2 True 2378 mRNA 0.42 15 11084029 11098340

Neighbor

gene id symbol gene type direction distance location
cct8 cct8,LOC107693911 coding upstream 420 11074655 ~ 11083609 (+)
grik1a grik1,grik1a,LOC107555187,LOC107701130,LOC107718733,LOC107693913 coding upstream 48702 10978094 ~ 11035327 (+)
tiam1a tiam1,LOC108423828 coding upstream 108933 10914702 ~ 10975096 (+)
sod1 sod1 coding upstream 193465 10884276 ~ 10890564 (+)
postna postn coding upstream 272265 10776302 ~ 10811764 (+)
LOC113543610 LOC100304491,LOC108423765 coding downstream 49255 11147595 ~ 11151753 (+)
kpna7 kpna7,LOC108277302,LOC108423764,LOC103041448,LOC107693907,LOC107720648,LOC107556882 coding downstream 53735 11152075 ~ 11155690 (+)
LOC113543473 LOC108276550 coding downstream 68797 11167137 ~ 11219048 (+)
mtnr1bb mtnr1bb,LOC108276622,LOC103030874,LOC108423763,LOC107720651,LOC107693905,LOC105890457,LOC107556861 coding downstream 136219 11234559 ~ 11245766 (+)
si:ch1073-15f19.2 LOC108277381 coding downstream 195357 11293697 ~ 11304416 (+)
G267070 NA non-coding upstream 27008 11056612 ~ 11057021 (+)
G267062 NA non-coding upstream 41639 11042217 ~ 11042390 (+)
G267051 NA non-coding upstream 47799 11035998 ~ 11036230 (+)
G266946 NA non-coding upstream 264290 10819526 ~ 10819739 (+)
G266901 NA non-coding upstream 349399 10732537 ~ 10734630 (+)
G267103 NA non-coding downstream 13046 11111386 ~ 11111597 (+)
G267257 NA non-coding downstream 334319 11432659 ~ 11432862 (+)
G267314 dyrk1a non-coding downstream 526034 11624374 ~ 11627972 (+)
G267317 NA non-coding downstream 552089 11650429 ~ 11652188 (+)
G267362 NA non-coding downstream 730229 11828569 ~ 11828818 (+)
scaf4a scaf4,LOC107555128 other upstream 201764 10865612 ~ 10882265 (+)
G266868 LOC108276566 other upstream 513324 10569028 ~ 10570705 (+)
dclk1a dclk1,LOC107728871,LOC107577778 other upstream 1321332 9704360 ~ 9762697 (+)
LOC113543674 NA other upstream 1659174 9419665 ~ 9424855 (+)
G266161 NA other upstream 1747739 9335801 ~ 9336290 (+)
vps36 vps36,LOC107701118 other downstream 3663973 14762313 ~ 14771073 (+)
trnar-ccu_11 NA other downstream 5989328 17087668 ~ 17087740 (+)
trnam-cau_40 NA other downstream 5989408 17087748 ~ 17087819 (+)
trnar-ccu_12 NA other downstream 5990109 17088449 ~ 17088521 (+)
trnam-cau_41 NA other downstream 5990189 17088529 ~ 17088600 (+)

Expression


Co-expression Network