zgc:171929 (ovol2,LOC108277324,LOC107746622,LOC107690845,LOC107575147,LOC107671611,LOC107386354)


Basic Information

Item Value
gene id zgc:171929
gene name ovol2,LOC108277324,LOC107746622,LOC107690845,LOC107575147,LOC107671611,LOC107386354
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 14821863 ~ 14824794 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942024.2
TGTTAGGCAGGCCGTGCCCTCCATGACGGCAGAGCCAGTGGGCCATTTGCATGGAAGGACCAGTTGAATGAAGAGACCAGATTCTCACTACCTGGCATGCAAAATCATCAGGGCagcagttaacacacacacacatacacacacacacacgcacacacacacacacgcacacacacacaggtgtgtctGCTGCCGTGGCCTCCCTCCAGAGGTATGGAAATGAGCACTGAGATTTGCGCTTTCTAACCGCTGAATAGGGTGAGGGGGGGAGGATGGttagaagacacacacataggAGGATTACAGTGAAGAGGGAGGCACAGATCAGCTGTGAGCACAGTGTCTGTGGACAGGTGAAGGGTTGCAAGGTTTAAGGTGATGTGGTGGAGTAGATGCAGTTCCAGTTAGAGTTTGAGTCGAGTTAAAGTTTGAGTTGCGATTGTAAGTAAAGCTACATAATCAGTTAGATTGGTTCAAAGGAGGCTCAAGGAAAGAAAATCAAGGATGCCACGTTCATTTCTGGTGAGGAGGAAGCGAGAAGCGTGCGGTGTATGGATGTGGGGAGATGCTCAAAACTCATCCTGGATCAATCACATCTGTGCAGCAGTGGCAGTAAAGGCACCTGGCATTGTCGGTCTGCAGTCAGTGCCGACATTAAACAGTGCTCCTTCTGGACCGGTAAACACATCCAGCAGTGCTGACCTAGAGGCAGCTTATGTGTCCAGCAGTAATGAATCAGGAACAATGAGTCCTGAGCACTGCCACTCTCAGCAGCCTCCTCAGAGTCTCTTTCAGACAGTTCCTTCGTCTGATCCAGCCTCAGCCACCAGAGCCAAGGTTCCTGCCCCCAGCTCTGGAGACTTCCAGTGTCCTGTGTGCCATAAAATTTTCCCACTCCAGCGCATGTTGACGCGACACCTGAAGTGCCACAGCCTTATCAAGAGGCACCCGTGCAGGTACTGCGGCAAAGGCTTCAACGACACCTTTGACCTGAAGAggcacatgcgcacacacacaggtgacgACACTCTACACACGCACCTCTTGCAGAGATCTGTACCCGCTAGAAGCCCTCCGTTTCTCACCCACACACCCCTGTGTGCAGGTATCCGGCCGTACAGGTGCGAGCTGTGCGAGAAGGCTTTCACGCAGCGCTGCTCGCTGGAGTCTCACCTGCGCAAGATCCATGGCGTGAGGCAGCAGTACGCGTACCGGCAGCGCCGCTCCAAGATCTTTGTGTGTGAGGACTGCGGCTTCACTTCCAGCCGGCCCGACGAGTACTTCATGCACGTGCGTCAGAGGCATCCGGAAAGTCCTGCACTGCGCAGATACTACCGCAAACACATGCAGGAAACGCCCACTCAGCCCCGCATCTCGCCCTTCATGCTCTACCCAACCACAGCGTTTTACATGTGAAACCCAACGCACTGTTTCTCTGAGCCTCTGCTGCCGCTGCATACGTGATAACACGAGCAGGCAGCTTCATGTAGGCCCACTGGCATGATGTTATACaaatacgctatatggccaaaggtttgtagacacctgaccatcacacccacatgtgttttttgaacatccctttccagatttag
>XM_026942025.2
TGTTAGGCAGGCCGTGCCCTCCATGACGGCAGAGCCAGTGGGCCATTTGCATGGAAGGACCAGTTGAATGAAGAGACCAGATTCTCACTACCTGGCATGCAAAATCATCAGGGCagcagttaacacacacacacatacacacacacacacgcacacacacacacacgcacacacacacaggtgtgtctGCTGCCGTGGCCTCCCTCCAGAGGTATGGAAATGAGCACTGAGATTTGCGCTTTCTAACCGCTGAATAGGGTGAGGGGGGGAGGATGGttagaagacacacacataggAGGATTACAGTGAAGAGGGAGGCACAGATCAGCTGTGAGCACAGTGTCTGTGGACAGGTGAAGGGTTGCAAGGTTTAAGGTGATGTGGTGGAGTAGATGCAGTTCCAGTTAGAGTTTGAGTCGAGTTAAAGTTTGAGTTGCGATTGTAAGTAAAGCTACATAATCAGTTAGATTGGTTCAAAGGAGGCTCAAGGAAAGAAAATCAAGGATGCCACGTTCATTTCTGGTGAGGAGGAAGCGAGAAGCGTGCGGTGTATGGATGTGGGGAGATGCTCAAAACTCATCCTGGATCAATCACATCTGTGCAGCAGTGGCAGTAAAGGCACCTGGCATTGTCGGTCTGCAGTCAGTGCCGACATTAAACAGTGCTCCTTCTGGACCGGTAAACACATCCAGCAGTGCTGACCTAGAGGCAGCTTATGTGTCCAGCAGTAATGAATCAGGAACAATGAGTCCTGAGCACTGCCACTCTCAGCAGCCTCCTCAGAGTCTCTTTCAGACAGTTCCTTCGTCTGATCCAGCCTCAGCCACCAGAGCCAAGGTTCCTGCCCCCAGCTCTGGAGACTTCCAGTGTCCTGTGTGCCATAAAATTTTCCCACTCCAGCGCATGTTGACGCGACACCTGAAGTGCCACAGCCTTATCAAGAGGCACCCGTGCAGGTACTGCGGCAAAGGCTTCAACGACACCTTTGACCTGAAGAggcacatgcgcacacacacagGTATCCGGCCGTACAGGTGCGAGCTGTGCGAGAAGGCTTTCACGCAGCGCTGCTCGCTGGAGTCTCACCTGCGCAAGATCCATGGCGTGAGGCAGCAGTACGCGTACCGGCAGCGCCGCTCCAAGATCTTTGTGTGTGAGGACTGCGGCTTCACTTCCAGCCGGCCCGACGAGTACTTCATGCACGTGCGTCAGAGGCATCCGGAAAGTCCTGCACTGCGCAGATACTACCGCAAACACATGCAGGAAACGCCCACTCAGCCCCGCATCTCGCCCTTCATGCTCTACCCAACCACAGCGTTTTACATGTGAAACCCAACGCACTGTTTCTCTGAGCCTCTGCTGCCGCTGCATACGTGATAACACGAGCAGGCAGCTTCATGTAGGCCCACTGGCATGATGTTATACaaatacgctatatggccaaaggtttgtagacacctgaccatcacacccacatgtgttttttgaacatccctttccagatttag

Function

symbol description
ovol2 Enables transcription cis-regulatory region binding activity. Involved in several processes, including negative regulation of Notch signaling pathway; negative regulation of keratinocyte differentiation; and negative regulation of transcription by competitive promoter binding activity. Predicted to be active in nucleus. Implicated in posterior polymorphous corneal dystrophy 1.

NR:

description
PREDICTED: putative transcription factor ovo-like protein 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942024.2 True 1595 mRNA 0.53 3 14821863 14824794
XM_026942025.2 False 1508 mRNA 0.53 4 14821863 14824794

Neighbor

gene id symbol gene type direction distance location
tpte tpte2,tpte,LOC108276937,LOC107718790,LOC107701101,LOC107720658,LOC108410538 coding upstream 25789 14788906 ~ 14796074 (+)
LOC113543654 thsd1 coding upstream 42276 14772902 ~ 14779587 (+)
LOC113543478 LOC108277282 coding upstream 79175 14735433 ~ 14742688 (+)
mtus2a LOC108277280 coding upstream 90600 14675105 ~ 14731263 (+)
slc7a1a slc7a1,LOC108277031,LOC103044157,LOC108410642,LOC107592154,LOC107718716,LOC107685000,LOC107720662 coding upstream 148489 14656962 ~ 14673374 (+)
LOC113543668 kiaa1024l coding downstream 94259 14919053 ~ 14922087 (+)
LOC113543667 LOC108277389 coding downstream 141376 14966170 ~ 14977527 (+)
LOC113543506 fbn2 coding downstream 154593 14979387 ~ 15042992 (+)
c17h5orf63 c16h5orf63 coding downstream 410474 15235268 ~ 15242258 (+)
marchf3 march3 coding downstream 420948 15245742 ~ 15270230 (+)
G269396 NA non-coding upstream 35668 14785647 ~ 14786195 (+)
G269393 NA non-coding upstream 38178 14782961 ~ 14783685 (+)
LOC117599336 NA non-coding upstream 217500 14598607 ~ 14604363 (+)
G269268 NA non-coding upstream 224045 14596964 ~ 14597818 (+)
G269251 NA non-coding upstream 265514 14555486 ~ 14556349 (+)
G269431 dact3 non-coding downstream 35961 14860755 ~ 14863006 (+)
G269569 NA non-coding downstream 303503 15128297 ~ 15157245 (+)
G269583 NA non-coding downstream 349474 15174268 ~ 15174492 (+)
G269635 lmnb1 non-coding downstream 454289 15279083 ~ 15289443 (+)
G269641 NA non-coding downstream 471750 15296544 ~ 15298327 (+)
vps36 vps36,LOC107701118 other upstream 50790 14762313 ~ 14771073 (+)
scaf4a scaf4,LOC107555128 other upstream 3939598 10865612 ~ 10882265 (+)
G266868 LOC108276566 other upstream 4251158 10569028 ~ 10570705 (+)
dclk1a dclk1,LOC107728871,LOC107577778 other upstream 5059166 9704360 ~ 9762697 (+)
LOC113543674 NA other upstream 5397008 9419665 ~ 9424855 (+)
trnar-ccu_11 NA other downstream 2262874 17087668 ~ 17087740 (+)
trnam-cau_40 NA other downstream 2262954 17087748 ~ 17087819 (+)
trnar-ccu_12 NA other downstream 2263655 17088449 ~ 17088521 (+)
trnam-cau_41 NA other downstream 2263735 17088529 ~ 17088600 (+)
trnar-ccu_13 NA other downstream 2264433 17089227 ~ 17089299 (+)

Expression


Co-expression Network