vps11 (vps11,LOC107744603)


Basic Information

Item Value
gene id vps11
gene name vps11,LOC107744603
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 13529335 ~ 13539892 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942030.2
CGTGACCCTAATGTAAGTCACATGATTTGAACAGGGCTCGGTGGTAAAATGGCTGCGTTCTTGCAGTGGAGgcgatttgttttttttgataaaGAAACGGTGAAAGATCCGAGCGAGAATGGAAAAAACTTTGCGTTGCCGCCTGGCATATCGGCTTGTGATTCAGGCAGGGGACATGTTGTTCTCGGAGATATGGAAGGTCAGATTTGGTTTTTATCAAGATTGTTGCAGCTGACCGCCTTCCAGGCATATAAACTGCGGGTGACACACCTGTACCAGCTGAAACAGCACAGCATCCTGGTGTCAGTGGGTCAGGACGAGCATGGCATTAATCCACTGGTAAAGGTGTGGAACACGGATAAGAGAGACAGCGGCAGTCCTCTGTGCACTCGTATATTTCCAGCCATTCCTGGAAACAAACCTGCAGAAGTGTCCTGTCTCAGTGTACACGAGAACCTCAATTTCATGGCTATAGGCTTTACAGACGGCAGTGTAGTTTTGACTAAAGGTGACATCAccagagacagacacagtaAAACCCTCACCTTGCATGAAGGAAGCTGTCCTGTCACAGGTCTGGCTTTCCGCCAGGCGGGAAAAGTCACCCACTTGTTTGTGGCTACTCTTGAGAAAGTACAGTGTTACACCTTGTCTATGAAGGAGTATCCTCGTGTGGAGCTGGATACCCACGGCTGCGCTTTGCGCTGCTCCGCCCTCACGGACCCCTCTCAGGACTCACAGTTCATTGTAGCAGGAGATgactgtgtgtatctgtaccAGCCTGATGAAAGAGGACCCTGCTTTGCCTTTGAAGGACATAAAATCCTGGCGCACTGGCACCGGGGTTACTTACTACTGATTTCCCGAGACATCAAGTCACCTAACAAGCCTGACTTTGGGGCTAGACAGTTGTCTCCAACAGAAAAGCAGGTCTTAACGATTTATGACCTGGACAATAAGTTCATCGCCTACAGTGCAGCATTTGATGACATTATAGACGTCCTGGCAGAGTGGGGCTCGTTTTACATCCTGACAAGAGATGGACAGATGTTTATGCTGCAAGAGAAGGACACCCAGACTAAGCTAGAGATGCTGTTTAAGAAGAATTTGTTTGTGATGGCAATTAACCTTGCAAAGAGCCAGCATCTGGATAATGATGGTCTTTCTGAGATATTTAGACAGTATGGAGACCACCTGTATATCAAAGGGGACCATGACGGAGCTATCCAACAGTATATTCGAACCATTGGGAAACTGGAACCCTCATATGTCATCCGTAAGTTCCTGGATGCTCAGAGAATACACAACCTTACTGCATACCTGCAGGCCCTCCACAGGCAATCCCTGGCCAACGCAGATCACACCACGCTGCTCCTCAACTGCTACACCAAACTGAAGGACAGCTCCAAGCTGGAGGAGTTCATTAAGAGCAGCGAGAGCGAGGTGCATTTTGATGTGGAGATAGCCATAAAGGTGCTGCGCCAGGCTGGATACCATAGCCACGCTGTGTTCCTGGCAGAGAAACACTCCCACCATGAATGGTACCTGAAAATTCAGCTGGAGGATTTAAAGAACTACCAGGAGGCTCTGCGCTATATTGGGCGGCTGCCATTTGAACAGGCTGAGACTAATATGAAGCACTATGGGAAAACTCTGATGCACCATGTTCCTGAGAGCACCACTGTGCTGCTCAAGAGGCTTTGTACCAATTACCAACCTATCCAGGACTCCACTGACCGGGACAGTGTCGACAAATTAGCAGTGAACAAGGCCAGTTCAGAAGAATTTATCCCTATCTTTGCTAATAATCCACGAGAGCTACGAGCATTCCTTGAGCACATGATTAAAGTGGAACCATTTTCACCACAAGGTGTGTATGATACACTGCTTGAGCTTCGGCTGCAGGACTGGGCTCATGAAGAGGATCCTGAGAAAAAGACAGACCTGCAGGAGGCAGCATTGTCACTGCTGAAGAGCGAAAACACAGTGTTTGATAAAGCTCTGGTTCTCTGCCAAATGCACAACTTTAAAGAGGGAGTGCTCTACCTGTATGAGAAGGGCAAACTGTACCAGCAGATCATGCACTACCACATGCAGAATGAGGAGTACTCTAAAGTGGTGGAGGCTTGTAAGCGCTTTGGTGATCAGGAAGTTTGTCTGTGGGAACAGGCCTTGGGCTACTTTGCACGCAAAGAAGAAGACTGCAAGGCGTACATTAGTGAAGTCTTACAACACATAGATCAGAATAACCTTATGCCACCACTGCTGGTGGTACAGACACTTGCCCATAACTCCACCGCAACGCTGTCAGTGATTAAAGATTATCTGATTAACAAACTGCAAAGGGAGAGCAAGCAGATTGAAGAAGATGAGAGGAAGATTCAGCAGTACCGTGAGGAGACTGCACATCTACGCTCTGAGATCCAGGAACTCAGCACCAGtgCAAAGATTTTCCAGAAGACAAAGTGCAGCATGTGTAATAGCCCTCTAGAGTTGCCATCAGTGCATTTCCTTTGTGGTCACTCTTTCCACCAGCACTGCTTCGAGAGCTATGCAGAGAGTGAGGCTGAGTGCCCAACATGCACTcctgaaaacagaaaagtgaTGGACATGTTACGGGCGCAGGAGCAGAAACGAGATCTACATGATCACTTTAATAGACAGTTGAGGAGTTCTAACGATGGCTTCTCTGTGGTGGCGGATTACTTTGGCCGTGGAGTTTTCAATAAACTGACTCTGATAACAGATCCTCCTGGGGGCAAGGCTGGGTCTGGGGGTTTAGAAGCTGATCTCCAGAGAGACCTACTCATTCATACCAAAAGAAATGCCTGAAAATCACATTAAGTATCAAATTGGAAGACTATGGTCATGCCCTAATGAATATGACTGAATTATAGGGCAAAGATTAGTTATTACTACATCCTGTTCTCCTACTCTTGTTCAAGGTTCCTGTTTTGCAGATGTGGACCTTCTGGAAATTCAGGCCCAAACTGATGCAGACCACCTCTAATAGTCAACTTAATATAGCTTATGAGCAAATCAATTGAAAATACAGCTGCTTGCAACCCCACACTGGGGTAAGCAACCTTTTTGTCTGTAAATGCACTGTGAATAGCAAAACTTCTGAACGTGTTGCTTTTCTTGTATGCTTGTCATCTGCAGTATATAATGATTAATACATATTTGGTATGTAGCCTGTGAATTTGTTGATGCTCATAATTACAAACTACCTTTCAGCAGCCACTGTTTGCACTCAACTTAATGAATACATGTTCAAATTTCTGGCATTAAATAAAAGGCGGTGAAGCACA

Function

symbol description
vps11 Predicted to enable protein-macromolecule adaptor activity. Acts upstream of or within several processes, including animal organ development; melanocyte apoptotic process; and melanocyte differentiation. Predicted to be located in cytoplasmic vesicle and vacuole. Predicted to be part of HOPS complex. Predicted to be active in endosome. Is expressed in brain; heart; immature eye; and retina. Human ortholog(s) of this gene implicated in hypomyelinating leukodystrophy 12. Orthologous to human VPS11 (VPS11 core subunit of CORVET and HOPS complexes).

NR:

description
vacuolar protein sorting-associated protein 11 homolog isoform X1

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0048794 swim bladder development biological_process
GO:0003406 retinal pigment epithelium development biological_process
GO:0003407 neural retina development biological_process
GO:1902362 melanocyte apoptotic process biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0010507 negative regulation of autophagy biological_process
GO:0001889 liver development biological_process
GO:0030318 melanocyte differentiation biological_process
GO:0060036 notochord cell vacuolation biological_process
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K20179 VPS11, PEP5; vacuolar protein sorting-associated protein 11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942030.2 True 3311 mRNA 0.46 16 13529335 13539892

Neighbor

gene id symbol gene type direction distance location
LOC113543522 hist2h2l,zgc:194989,LOC107719244,LOC103356012,LOC108277172,LOC107574861 coding upstream 23785 13504657 ~ 13505550 (+)
zpr1 zpr1,LOC107693980,LOC107747003 coding upstream 25948 13494721 ~ 13503387 (+)
pwp1 pwp1,LOC105905702 coding upstream 36218 13491329 ~ 13493117 (+)
bsx bsx,LOC107747047,LOC107589660,LOC107751411,LOC107579003 coding upstream 78542 13448733 ~ 13450793 (+)
LOC113543571 NA coding upstream 213119 13315938 ~ 13316216 (+)
ift46 ift46 coding downstream 670 13540562 ~ 13547225 (+)
LOC113543629 NA coding downstream 7445 13547337 ~ 13550191 (+)
tmem126a t126a,tmem126a coding downstream 242455 13782347 ~ 13784904 (+)
arrb2a arrb2,LOC100335038,LOC106567894,LOC105023937 coding downstream 271814 13811706 ~ 13822838 (+)
med11 med11,LOC107720680,LOC107676028 coding downstream 286900 13826792 ~ 13831196 (+)
G268587 NA non-coding upstream 2950 13521152 ~ 13526385 (+)
G268580 hspa8,LOC107577128,LOC100125490,LOC108423781,LOC107691633,LOC108277936,LOC107597532 non-coding upstream 53837 13432734 ~ 13475498 (+)
G268027 NA non-coding upstream 762968 12766153 ~ 12766367 (+)
G267801 LOC107739129 non-coding upstream 1006814 12522186 ~ 12522521 (+)
G267499 NA non-coding upstream 1097525 12431084 ~ 12431810 (+)
LOC117599363 NA non-coding downstream 319904 13859796 ~ 13863635 (+)
LOC117599376 NA non-coding downstream 402793 13942685 ~ 13947023 (+)
G269251 NA non-coding downstream 1015594 14555486 ~ 14556349 (+)
G269268 NA non-coding downstream 1057072 14596964 ~ 14597818 (+)
LOC117599336 NA non-coding downstream 1058715 14598607 ~ 14604363 (+)
scaf4a scaf4,LOC107555128 other upstream 2647070 10865612 ~ 10882265 (+)
G266868 LOC108276566 other upstream 2958630 10569028 ~ 10570705 (+)
dclk1a dclk1,LOC107728871,LOC107577778 other upstream 3766638 9704360 ~ 9762697 (+)
LOC113543674 NA other upstream 4104480 9419665 ~ 9424855 (+)
G266161 NA other upstream 4193045 9335801 ~ 9336290 (+)
vps36 vps36,LOC107701118 other downstream 1222421 14762313 ~ 14771073 (+)
trnar-ccu_11 NA other downstream 3547776 17087668 ~ 17087740 (+)
trnam-cau_40 NA other downstream 3547856 17087748 ~ 17087819 (+)
trnar-ccu_12 NA other downstream 3548557 17088449 ~ 17088521 (+)
trnam-cau_41 NA other downstream 3548637 17088529 ~ 17088600 (+)

Expression


Co-expression Network