opcml (opcml,LOC108277316,LOC108423784,LOC107686109,LOC107746995,LOC107588660,LOC107577150,LOC107691701,LOC107751394)


Basic Information

Item Value
gene id opcml
gene name opcml,LOC108277316,LOC108423784,LOC107686109,LOC107746995,LOC107588660,LOC107577150,LOC107691701,LOC107751394
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 12813800 ~ 13030680 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942051.2
TCCAGTTCCGCTCCAGTCCAGATCTGCGAGCTGCagctgatggtgtgtgtgtgtgtgagtgtgtgtgagtgagtgtgtatcagTCTCCCTCTGACCTAACCACGGCAACAACATCTGCCATTGCTCTGTGCTCGGGAATATCAGCCTGCGTTGCTTTCGAGTCGGCTCGAGCGACGCGCTTTGCAGTTTGTTAAGGCGGAATTTTCAGCGCACGGTTTCGCTCCCAGCAGCTCTGAAGGCGCGTTTGGTGAAGCTCTGCGTCACTGCTTCACATCCAGCTCACACACGCCAAGGCGGCGGAAGTTTTCCAGGAATATCCAAGAGGACAGAGTGtttgatttggattttttttttaaaaaaaagcgcTCTGGCTGGAAATCTGCACGCGGGACAAGCCGCTGATAACCGGACACATCCGATCTTTTTTAAGCGCTCGCGCTTTAGTTGGGGGGAAgttttgcaaaacaaacaaaaaccaaacaaacatggGCTTATGTGGTTATGTAGTTGTGCCCTGGAGATGCCTGGCAGTGCTGGCTCTGAGACTGCTCTTCCTTGTGCCTGCAGGAGTGCCAGCGCGCAGCGGAGACTCTTATTTAAAGGACAACATCACGGTGAGACAGGGGGACAGCGCCGTCTTAAAATGCAATGTGGACAGCAAGGTATCGAGGGTAGCTTGGCTGAACCGCACCACTATTCTCTTCACGGGGAGTGAGAAATGGTCTCTGGACCCGCGAGTGGTCTTGCTGAATAACACAGCAGTGACAGAGTACAGTATAAAGATCCTGGATGTGAACTTGCATGACGAAGGGCCATACGTGTGCTCCATTCTCACAAACAAGAAGCCTGAGTCCACCAAAGTTCACCTCATCGTCCAAGTTCCGGCCAGGATTGTGAACATCTCGACAGACATAACGGTAAACGAGGGCAGTAACGTCAGTCTCATGTGTCTGGCGATTGGACGACCTGAACCCAGTATTATATGGAAATATCGCTCTGCTAGAGGTCGTAAATTCATCAGTGAGGGCGAGTATGTTGAGATGACTGCGATCACCAAAGAGCAGTCCGGATCATATGAGTGCATCTCTTCAAATGACATCTCGCCCCCGGATGTCAGGACGGTACAGATCACTGTAAACTATCCTCCAGTCATTTCGCAAGCTCGCAGCACAGGGACTGCTGTTGGACAGAGAGGAGTGCTGCAGTGTGAAGCATCAGCTGTTCCTCTTGCTGACTTTCAGTGGTACAAGGAAGAGCGCCGCCTTTTCAATGGACTCAATGGAGTCAAAATCGAAAACAAAGGTAAACAGTCcatgttgatatttttcaacGTGTCTGAAGAGGACTATGGAAACTACACGTGTGTGGCCATGAACACGCTGGGAATCACAAATGCAAGCATAATCCTGTATGgcccAGGAGCAATACACGACGTGAACAGCGCTGCACTTTCTCCATCCAGCTCTGTCTGCCCACTGCTCACATTCATTCTCTTTTATCTCAAGTTTTGATGCTAGAGACACCAACATCTGCATCAGCTCCTCTCGGCATAACACAAAGACAGACTCAAAGTCCCTTCATTAGAAGCAAaccattattattgttattatttggtTTGAACTTTTTTCTCCAGGGGTTGGGCTAGAAAATAGATTTGGACTATGAGTCTGTCCCATGAGAACATGAGACTGCACAGGTTAGGGTTCTGTGACTAGCTGGTAAATATAGTGagctcttaattttttttaaatgtcaaagaaaagcaaaaagtcATTtgatcgtaaaaaaaaaaatacatggatGGTTTTGCTCGGTATTGAAATGTGTGAGTTGAGATGTCTGTCATGTCAGCTttccttgtaaaaaaaaaaaaatatggagtTCTTGCAATGAattcttctttttaaataatcaacaaaagtgcaaaaaatcatgtgaTATTTGATTTACTGTACCTGTACAGATGTATACAGTGGAATACTTACAGTTCATTTGAATATGAGTGAGGTCAGTCTGTGCGTAATATAGCTCacatttcctgaaaaaaaaaaaacagtctggtGTGTATTATAATGTTCATCCATTACTGAAATAATGTTCTGATTTTGTAAAAAAGGACTTCTGCATtaccacacacagacagtaggTCAGTAGGTTAGTCATCTTACCTGGTCTTTTTAGAACCTTATTTTAGACACTCTTTACAgtaatatatacacatgtagGTTTAGGAAGTAGGCAACACACTGGATTTGCAACATTTGATGCAACATTTGGTGCACATTTAGAGTAACACTTCTGCAAATGTTATCTACATGTGGAACAAGGCCCTAAGTACCGCATGTGTAATCAGACAAAattgtataattattaatatacagtatacactttCCCTGCGGTTCCTGTATAATTGGGAGATTTCCTGTTAATTGGTGATCATAAGGTTATAAATAGGGATGCACTgataccatttttttcagacCAAATAAGAATAtgagtgcatgtgttttggtACTCGTCAATACTGATACCAATACTGATACCGAAATGGGTAACCTGCTTAGTAATAAGCAATCACATtcatcatggaacattttatttagctctgtttatattGGGTGCTGCCATCTGCTGCTAGCTATGAACTCCTCGTGCTGAGTTTTAGGTTTAAGATATTTTATAAGGTTGCTTGTATTGTAGGATGATGCTCTAGTTCCTCCTGTTGatattttcccagaacacaGTTTGccgtctgctttgctttgattgccattAATCGTGAAATAGGTCCAGATCGTTGTCATTTTGTGTCGTCTGTACACTCGGCTTACCTCACATACTATCACATTGTATCAAATTTTAGCATTGGAGCAATGAGCTCCGAGCACGGTACTGGACCGATACATGATACCAGTATTGGTATCAATGCATCCCTAGTTATTAACGGCTCACAAATGAAGAAGacccttcatttaaaaaaaggtatGTTTTTATCATTGTTTGTTTACAATCTGTTGAGGTATCTTACCAGTGTTCTCTCTCAGGTTTTAAGGGATGACTTTAATTTTTGTGTGCCTGTGAATGTCTATGCTTAAATCCTTATGGCAAaggatattaaaaaataagGCCAACACCA
>XM_026942052.2
CACCGCGCCGCTGCAAGTTGCGCTGGATTTCAACCTGAGCTCTACTCTTTACCCAATGCGCTCCACACGGACAACACACGCTAGTTTTGTAGTAACTGCACTGTAAGAGTGTCGGGAGCGGACGGAGCTTGTGTGAGCCAGAAGAAAAAGCAATCAGAGAAGCGTTATCATCAGAGTCAGTTTGAAGAATGTTCAACCCGGTGGGCTGCGTGCTCGCGGCGTGGCTGCTCGCGCTCATCGTGTATCCAGGAGTGCCAGCGCGCAGCGGAGACTCTTATTTAAAGGACAACATCACGGTGAGACAGGGGGACAGCGCCGTCTTAAAATGCAATGTGGACAGCAAGGTATCGAGGGTAGCTTGGCTGAACCGCACCACTATTCTCTTCACGGGGAGTGAGAAATGGTCTCTGGACCCGCGAGTGGTCTTGCTGAATAACACAGCAGTGACAGAGTACAGTATAAAGATCCTGGATGTGAACTTGCATGACGAAGGGCCATACGTGTGCTCCATTCTCACAAACAAGAAGCCTGAGTCCACCAAAGTTCACCTCATCGTCCAAGTTCCGGCCAGGATTGTGAACATCTCGACAGACATAACGGTAAACGAGGGCAGTAACGTCAGTCTCATGTGTCTGGCGATTGGACGACCTGAACCCAGTATTATATGGAAATATCGCTCTGCTAGAGGTCGTAAATTCATCAGTGAGGGCGAGTATGTTGAGATGACTGCGATCACCAAAGAGCAGTCCGGATCATATGAGTGCATCTCTTCAAATGACATCTCGCCCCCGGATGTCAGGACGGTACAGATCACTGTAAACTATCCTCCAGTCATTTCGCAAGCTCGCAGCACAGGGACTGCTGTTGGACAGAGAGGAGTGCTGCAGTGTGAAGCATCAGCTGTTCCTCTTGCTGACTTTCAGTGGTACAAGGAAGAGCGCCGCCTTTTCAATGGACTCAATGGAGTCAAAATCGAAAACAAAGGTAAACAGTCcatgttgatatttttcaacGTGTCTGAAGAGGACTATGGAAACTACACGTGTGTGGCCATGAACACGCTGGGAATCACAAATGCAAGCATAATCCTGTATGgcccAGGAGCAATACACGACGTGAACAGCGCTGCACTTTCTCCATCCAGCTCTGTCTGCCCACTGCTCACATTCATTCTCTTTTATCTCAAGTTTTGATGCTAGAGACACCAACATCTGCATCAGCTCCTCTCGGCATAACACAAAGACAGACTCAAAGTCCCTTCATTAGAAGCAAaccattattattgttattatttggtTTGAACTTTTTTCTCCAGGGGTTGGGCTAGAAAATAGATTTGGACTATGAGTCTGTCCCATGAGAACATGAGACTGCACAGGTTAGGGTTCTGTGACTAGCTGGTAAATATAGTGagctcttaattttttttaaatgtcaaagaaaagcaaaaagtcATTtgatcgtaaaaaaaaaaatacatggatGGTTTTGCTCGGTATTGAAATGTGTGAGTTGAGATGTCTGTCATGTCAGCTttccttgtaaaaaaaaaaaaatatggagtTCTTGCAATGAattcttctttttaaataatcaacaaaagtgcaaaaaatcatgtgaTATTTGATTTACTGTACCTGTACAGATGTATACAGTGGAATACTTACAGTTCATTTGAATATGAGTGAGGTCAGTCTGTGCGTAATATAGCTCacatttcctgaaaaaaaaaaaacagtctggtGTGTATTATAATGTTCATCCATTACTGAAATAATGTTCTGATTTTGTAAAAAAGGACTTCTGCATtaccacacacagacagtaggTCAGTAGGTTAGTCATCTTACCTGGTCTTTTTAGAACCTTATTTTAGACACTCTTTACAgtaatatatacacatgtagGTTTAGGAAGTAGGCAACACACTGGATTTGCAACATTTGATGCAACATTTGGTGCACATTTAGAGTAACACTTCTGCAAATGTTATCTACATGTGGAACAAGGCCCTAAGTACCGCATGTGTAATCAGACAAAattgtataattattaatatacagtatacactttCCCTGCGGTTCCTGTATAATTGGGAGATTTCCTGTTAATTGGTGATCATAAGGTTATAAATAGGGATGCACTgataccatttttttcagacCAAATAAGAATAtgagtgcatgtgttttggtACTCGTCAATACTGATACCAATACTGATACCGAAATGGGTAACCTGCTTAGTAATAAGCAATCACATtcatcatggaacattttatttagctctgtttatattGGGTGCTGCCATCTGCTGCTAGCTATGAACTCCTCGTGCTGAGTTTTAGGTTTAAGATATTTTATAAGGTTGCTTGTATTGTAGGATGATGCTCTAGTTCCTCCTGTTGatattttcccagaacacaGTTTGccgtctgctttgctttgattgccattAATCGTGAAATAGGTCCAGATCGTTGTCATTTTGTGTCGTCTGTACACTCGGCTTACCTCACATACTATCACATTGTATCAAATTTTAGCATTGGAGCAATGAGCTCCGAGCACGGTACTGGACCGATACATGATACCAGTATTGGTATCAATGCATCCCTAGTTATTAACGGCTCACAAATGAAGAAGacccttcatttaaaaaaaggtatGTTTTTATCATTGTTTGTTTACAATCTGTTGAGGTATCTTACCAGTGTTCTCTCTCAGGTTTTAAGGGATGACTTTAATTTTTGTGTGCCTGTGAATGTCTATGCTTAAATCCTTATGGCAAaggatattaaaaaataagGCCAACACCA
>XM_034312922.1
gtgtttgagtttgtTTGCGAGAGTGGGTGATGCACCATTGTAGTTTTGAATTTACATTAACGAAAATTACCCTTAGACTTCcagtatgtaaATGCAATGTGGACAGCAAGGTATCGAGGGTAGCTTGGCTGAACCGCACCACTATTCTCTTCACGGGGAGTGAGAAATGGTCTCTGGACCCGCGAGTGGTCTTGCTGAATAACACAGCAGTGACAGAGTACAGTATAAAGATCCTGGATGTGAACTTGCATGACGAAGGGCCATACGTGTGCTCCATTCTCACAAACAAGAAGCCTGAGTCCACCAAAGTTCACCTCATCGTCCAAGTTCCGGCCAGGATTGTGAACATCTCGACAGACATAACGGTAAACGAGGGCAGTAACGTCAGTCTCATGTGTCTGGCGATTGGACGACCTGAACCCAGTATTATATGGAAATATCGCTCTGCTAGAGGTCGTAAATTCATCAGTGAGGGCGAGTATGTTGAGATGACTGCGATCACCAAAGAGCAGTCCGGATCATATGAGTGCATCTCTTCAAATGACATCTCGCCCCCGGATGTCAGGACGGTACAGATCACTGTAAACTATCCTCCAGTCATTTCGCAAGCTCGCAGCACAGGGACTGCTGTTGGACAGAGAGGAGTGCTGCAGTGTGAAGCATCAGCTGTTCCTCTTGCTGACTTTCAGTGGTACAAGGAAGAGCGCCGCCTTTTCAATGGACTCAATGGAGTCAAAATCGAAAACAAAGGTAAACAGTCcatgttgatatttttcaacGTGTCTGAAGAGGACTATGGAAACTACACGTGTGTGGCCATGAACACGCTGGGAATCACAAATGCAAGCATAATCCTGTATGgcccAGGAGCAATACACGACGTGAACAGCGCTGCACTTTCTCCATCCAGCTCTGTCTGCCCACTGCTCACATTCATTCTCTTTTATCTCAAGTTTTGATGCTAGAGACACCAACATCTGCATCAGCTCCTCTCGGCATAACACAAAGACAGACTCAAAGTCCCTTCATTAGAAGCAAaccattattattgttattatttggtTTGAACTTTTTTCTCCAGGGGTTGGGCTAGAAAATAGATTTGGACTATGAGTCTGTCCCATGAGAACATGAGACTGCACAGGTTAGGGTTCTGTGACTAGCTGGTAAATATAGTGagctcttaattttttttaaatgtcaaagaaaagcaaaaagtcATTtgatcgtaaaaaaaaaaatacatggatGGTTTTGCTCGGTATTGAAATGTGTGAGTTGAGATGTCTGTCATGTCAGCTttccttgtaaaaaaaaaaaaatatggagtTCTTGCAATGAattcttctttttaaataatcaacaaaagtgcaaaaaatcatgtgaTATTTGATTTACTGTACCTGTACAGATGTATACAGTGGAATACTTACAGTTCATTTGAATATGAGTGAGGTCAGTCTGTGCGTAATATAGCTCacatttcctgaaaaaaaaaaaacagtctggtGTGTATTATAATGTTCATCCATTACTGAAATAATGTTCTGATTTTGTAAAAAAGGACTTCTGCATtaccacacacagacagtaggTCAGTAGGTTAGTCATCTTACCTGGTCTTTTTAGAACCTTATTTTAGACACTCTTTACAgtaatatatacacatgtagGTTTAGGAAGTAGGCAACACACTGGATTTGCAACATTTGATGCAACATTTGGTGCACATTTAGAGTAACACTTCTGCAAATGTTATCTACATGTGGAACAAGGCCCTAAGTACCGCATGTGTAATCAGACAAAattgtataattattaatatacagtatacactttCCCTGCGGTTCCTGTATAATTGGGAGATTTCCTGTTAATTGGTGATCATAAGGTTATAAATAGGGATGCACTgataccatttttttcagacCAAATAAGAATAtgagtgcatgtgttttggtACTCGTCAATACTGATACCAATACTGATACCGAAATGGGTAACCTGCTTAGTAATAAGCAATCACATtcatcatggaacattttatttagctctgtttatattGGGTGCTGCCATCTGCTGCTAGCTATGAACTCCTCGTGCTGAGTTTTAGGTTTAAGATATTTTATAAGGTTGCTTGTATTGTAGGATGATGCTCTAGTTCCTCCTGTTGatattttcccagaacacaGTTTGccgtctgctttgctttgattgccattAATCGTGAAATAGGTCCAGATCGTTGTCATTTTGTGTCGTCTGTACACTCGGCTTACCTCACATACTATCACATTGTATCAAATTTTAGCATTGGAGCAATGAGCTCCGAGCACGGTACTGGACCGATACATGATACCAGTATTGGTATCAATGCATCCCTAGTTATTAACGGCTCACAAATGAAGAAGacccttcatttaaaaaaaggtatGTTTTTATCATTGTTTGTTTACAATCTGTTGAGGTATCTTACCAGTGTTCTCTCTCAGGTTTTAAGGGATGACTTTAATTTTTGTGTGCCTGTGAATGTCTATGCTTAAATCCTTATGGCAAaggatattaaaaaataagGCCAACACCA

Function

symbol description
opcml Is expressed in nervous system. Human ortholog(s) of this gene implicated in ovarian cancer. Orthologous to human OPCML (opioid binding protein/cell adhesion molecule like).

NR:

description
PREDICTED: opioid-binding protein/cell adhesion molecule-like

GO: NA

KEGG:

id description
K06773 OPCML, OBCAM; opioid binding protein/cell adhesion molecule-like

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942051.2 True 3136 mRNA 0.43 7 12897193 13030680
XM_026942052.2 False 2818 mRNA 0.42 8 12813800 13030680
XM_034312922.1 False 2584 mRNA 0.40 7 12931650 13030680

Neighbor

gene id symbol gene type direction distance location
panx3 panx3,LOC107747045,LOC107579026,LOC107686209,LOC107691702,LOC107589683 coding upstream 51460 12755403 ~ 12762340 (+)
pknox2 pknox2,LOC107691639 coding upstream 59493 12680756 ~ 12754307 (+)
robo3 robo3 coding upstream 183065 12478623 ~ 12630735 (+)
fez1 fez1,LOC107691643,LOC107751387 coding upstream 421143 12379691 ~ 12392657 (+)
vps26bl v26bl,LOC108423787,LOC107588734,LOC107751386,LOC107691644,LOC105024202 coding upstream 439795 12365051 ~ 12374005 (+)
LOC113543571 NA coding downstream 285258 13315938 ~ 13316216 (+)
bsx bsx,LOC107747047,LOC107589660,LOC107751411,LOC107579003 coding downstream 418053 13448733 ~ 13450793 (+)
pwp1 pwp1,LOC105905702 coding downstream 460649 13491329 ~ 13493117 (+)
zpr1 zpr1,LOC107693980,LOC107747003 coding downstream 464041 13494721 ~ 13503387 (+)
LOC113543522 hist2h2l,zgc:194989,LOC107719244,LOC103356012,LOC108277172,LOC107574861 coding downstream 473977 13504657 ~ 13505550 (+)
G268027 NA non-coding upstream 47433 12766153 ~ 12766367 (+)
G267801 LOC107739129 non-coding upstream 291279 12522186 ~ 12522521 (+)
G267499 NA non-coding upstream 381990 12431084 ~ 12431810 (+)
G267429 NA non-coding upstream 802511 11981181 ~ 12011289 (+)
G267381 NA non-coding upstream 945137 11863887 ~ 11868663 (+)
G268580 hspa8,LOC107577128,LOC100125490,LOC108423781,LOC107691633,LOC108277936,LOC107597532 non-coding downstream 402054 13432734 ~ 13475498 (+)
G268587 NA non-coding downstream 490472 13521152 ~ 13526385 (+)
LOC117599363 NA non-coding downstream 829116 13859796 ~ 13863635 (+)
LOC117599376 NA non-coding downstream 912005 13942685 ~ 13947023 (+)
G269251 NA non-coding downstream 1524806 14555486 ~ 14556349 (+)
scaf4a scaf4,LOC107555128 other upstream 1931535 10865612 ~ 10882265 (+)
G266868 LOC108276566 other upstream 2243095 10569028 ~ 10570705 (+)
dclk1a dclk1,LOC107728871,LOC107577778 other upstream 3051103 9704360 ~ 9762697 (+)
LOC113543674 NA other upstream 3388945 9419665 ~ 9424855 (+)
G266161 NA other upstream 3477510 9335801 ~ 9336290 (+)
vps36 vps36,LOC107701118 other downstream 1731633 14762313 ~ 14771073 (+)
trnar-ccu_11 NA other downstream 4056988 17087668 ~ 17087740 (+)
trnam-cau_40 NA other downstream 4057068 17087748 ~ 17087819 (+)
trnar-ccu_12 NA other downstream 4057769 17088449 ~ 17088521 (+)
trnam-cau_41 NA other downstream 4057849 17088529 ~ 17088600 (+)

Expression


Co-expression Network