si:dkey-175g6.2 (LOC108276627)


Basic Information

Item Value
gene id si:dkey-175g6.2
gene name LOC108276627
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 13884461 ~ 13889981 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942071.2
GGGATGGAAAGCGCCTAGCTGAAGGGCCGTCACTGGGCTAATGCTGAGTGGCAGTCGATAATGCCAAGGCGGATCACACTCTGCCCTCTGGCCCCTAACCACTGACAGCCCAGGTAGAAACACACGAGCTTTACTCCGTTTGGAGCTAATAATATATGGATTTAGAGCCTAACACGTGTTAAAACGTGTCCTCTTTCAAAACCACAAACGGTCAGAATTAAAGCGCGTgggtttgtttttcagtttgtttggAACTGGTTTGAATGTGTCAAGATATACTAGATATACTCGTTAGACCGAAGGCCCTGTTTGTGTCATGGAGTTGATTAGTGGTTCAGGAACATGTCGTGACGCATCCAGCATTTTCAGAAATTGTTGAAATGAGATTTTCCCATTGTGCGAAGGCGCTGCCACTTCCAATGAGACTCGCGGGACTTCAATATGCGCAGTGCGACTAATTCAATTACACCAACCATAAACTGTGATTGGCGGGTTTGTGGTGGGTCAAGACTCCGCCAGAGTATTTTAGCAATTAGGCCTTATTCCTAAAGAGGATGAATATTTGAGTTATAACCACGTGAGTAAAGGCTGCTGCAGAGCATCTTCATATAATTTAATGGATTGCATCCCAGTGAGTCCTATTTTAAGGATCATgtgtatgtaaaaataattgaaCCAAAAATGCACGTAATTCCCACAAATGATAGCCTCTAAATAGGGACAGAATGAGAGGATGACGCGCGAGCCAGATGGATGAAATTCGGCGACGGGCGCGAGAGACAAAGACTGGCAAATTGGAGGTGCTCGGGAAATGGAGCGGAAATGGAGCGGCGGAGCGGAGCCGCGTGCGTCACGGCGGCCTCAGTCGCTTGGCTTGGGTCCAGGTCCGATTAACGGGCAACTCAGTCCCTACACATACCAGACCGAAGGGGGGAAAACTAGTGTTTTTAAAAGGGGGATACCGGACGCCGCCAGAAGAGCTGCGTCTGTGCACCAAACAGGagtttcactttatttaaactCTTCAATTAGCCTCCCAATTAAATAGGCCCACGCATAATTTATCATCATTCTGCTTCCGAACGCACGCCACTTAATGAATAAAAGGGAATTTGAGAAGTTCGTTTAAGCGAGAATATGTTTCTGATTTCCAAGCACGGTGCTCTCCGTTCTTAATGGAGAGAGTTGCTTCATTCATGCCGTTTCCGTTCATTCATCAGAGCAGCGTAACGTACCCTCTGAGTTCAAACGAGACACGAAATTCTTATCAATGAAGGGGGTGACGTCAAAGGCGGCGCGCGCTGACTCGTCGGTCACGTGGCCCCACGCGCCTGTACTTATCGGCGCTGAGCTGTCCGCGgtcctgataaaaaaaaatcacgcgCCACACTGACGTACAACAACCAATAACAGCTTTCACATGTGCAAATAAGAGTGAATCGTAAACGAAGATCAGTCTGGGCCTggaaaagaaacttttttttttcttagtttcgAATTAAATAAGGACTGAGATCTTCGAGCTTCATTCGTCAGACACGCACAGGAGGCACAGGAGCGCTTCTGAGTTGCAGCTGAATTTTGTGTGGGATCGCAGGTGCTCACCCCGTCCCCTCTCCCCCAGCCCCATCTGGTCTGCTCTGCAAGGACATGACCTGCTGCCATCCTCCCTCCTCTACTCTCCTGTTAGTCCTGCTCAGCATTGCTCCACAGCTACCTGCTGCTGCCCCACTGCTTACTGAAAGCCCTCTCACGGGCACCAGCAATGAGACACTCTGGCTGGTGCACCCAGAACCAGCCACAGCAGCTGGAGCGGTCAGGACACACAGGAAAGTGGAAGGCATCCTCCAGACTCCTCTGGGACAGGGCCGCTTTACAGACATAGACTCTGCCAGGGCGCTGGTGTCTGTCTTGTTAGAGGCTCTTGATCATCCAGCTAGAGAAGAGAAGGGAAACCTGGTAGAGACAGAGGAGTACATGAAGAAGGAGCCATGGAAGGAGCTGGAGATGTGGAGTGATCAGGAGGACCACAGAAAACCTGAACAAGGCATAGGTGAGGAGGAGAATATGGAGATACCCCAGTCTGGAGTGACTGAGGCAGTGCAAGGAGTGGAGAatggaggagaagaaaaggTAGGACTAACAGATCCAAGGGTTTCAGATGAGGAGGACGAGAATGGAAATGGTGAAAACAAGTTTGAGGAAAAGGAAGGGCTTCTGCAGAGTTTGCTCAGTAAGAAAGCAGCGGTCccagcccaaatcatcacctcGCTACAGCGTAAAACCAGGGGCTATTTTCAAAACATTGACCTTGGTCTCCAGGACAATGAGATCCTCCCACCTCTGAAGGGCTACAAAGCTTATAACCAGCAGCTGGCTTTGGCCAGCAAGAAGCTCAAGtggcaggaagagagagagaaaaacccCTCCCAGCTCGACAGAAACTTCATGGATGATTTTGACTTCatagaagaggaggaggaggtccTTCCACGCGAGGAAGAGGAGGCAAGAGCACGAGCTGAGCAGGAAGAGGTGCGGAGACAGGAGGCAGAGGCACAAGAGGCGAGAGAGGAGGAGCAGAGACTTGCAGACATCGCCTCTGACATGCTTCTGGAATACATGGGgaggaaacaaaaaacagccaCTTATATGAAAGACAGGAAGAATGCTTTATTGCTCAACAATGTGGCTGAGGACAAGCGGTCTAATGAAGTGGaggacagtgatgatgatgaaatggACCCAGAGACAATTGACAAGCTGATCGAAATCTCTAGTAAACTGCACCTACCTGCTGATGATGTAGTTGAGATCATTACAGAtgtggaggagaagaagaagaggaaggacCCACCCCCCAGCAATGCCCCTCGTTTCCGGCCTTTAGTCCCACTCAAAGCCAAACAAAGGGCTCCCCTTTATCAATACCCTAAGACCCCAAAGAAATCCTCTTACAAGATGAACCCATATAAAAAGTGGTACAAGGAGAAAAGTAAATCCAAGTTCCACAAGCAGGACTACTGGTTTAAGCCAGAGAAGCAGTTACTAGCATATCCTTCCTTTCCCTACTATCAGAAGCCATATCGAGCCTATTATCCTGTCTATTTTCCATCTCCTAAACCACGCTTCTACACAAATCCTGCACTCTCCTTTGACTACAACTTTGGGGACCCCATTGGTTATGGCTTCAAGCCTCCCAAACGTAGGTACAAAGACAGAGCCAAGGGGAGGGAGCGAAACTGGGTGCAAGGGGCCCGCCGGCCCCAAAACATCTACCCTTTAGCAGACACAGTCATTTCTAACTACATCCTTCCTCATCCCCGAACTTACCAGACGCTCCCCGTGCCCAAAGCCCGCTCTCCTCCAAGTGCAGTGGCACCTGGCTATTATTACCATCCAGACTATGCTTATGATGAGCCAGAGCCTGTGCCAGATAGTGACGATGAGCTGGAGAACTTCATTGAGAAGATTTACTACAATCGAAGGTTATTCTAGATAGTTCTCTATCTGTGGGAAAGACCTGTGATAAACCATAGCGATGAAAAAAGAGTGAGgagaacaaagagaaaaatggagaaagtgAGGGAGTGAGGTTAAGGGCTGAGGAAAGACTAATTCTATGTTACTTCTCCActcttgttttttaaaacattccAGGTTAGGCCAGAAAAGCGATGATAATGAGGTACTGGACCctctttgtgtgtttgcattctGTTCCTCTCGcagtttacattttcatttggtgAGAGAACTTACGGGTGAATTTGACAGGCTTCATTCAGGTATGGTTTTACTCTTGCATGTCAAAACATTTTAGGTGCCAATTGCAAGAGACCCATGTTTACACAAAGATTACTTTTAATGCTTGATTAAttaagtgattttaaaaaagggtCTCAGCTTGGGGCTGAATTCTTGACTCACTAGTGAAATTATTACTGACCCATCTTTTTCATAGGCCATGTTTAGTTGTTATCAGTAGTCTTTTTGTCTTAATATGGCTCTATTTAATTCATGTGCATGCAGGTCTTGCACCCTTGAAACTAATAACTTTatgtgaaacaaaaacaaatatccACCACAAACTTGAAAGCAAATCTTccattctgtttaaataaatgcaaaatggtGGGTGTCTTTAATGGATGGATGTCCTGTGACGGTAGTTTTTTCAGTATTCTTTCACCTTGCCAATGATTTACTCAATGCCtcacataaacatttttaaaacgcCTTTATTACAATTTATGGGTTGGTTCTAGCATTCTATCAACACATTGTATCTTTGTCTTGAGGGTCAGAAGAAAGCTGTATATATTATGTCTATTCAAAAGAAGTTTTAAAACACTTGAAAAGTCTTGAGAAATGAACTGAGGTTGAAACTTCTGCACGTCTATCTGTATTtgcatcttaaaaaaaacagaaaaaaatatgggGGAACTTGCCTCTTTGAAAAACtgtggttatttaaaaaaaaaaa

Function

NR:

description
neurosecretory protein VGF-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942071.2 True 4486 mRNA 0.46 2 13884461 13889981

Neighbor

gene id symbol gene type direction distance location
c17h17orf49 cq049,LOC108424543,LOC105902403 coding upstream 46382 13833427 ~ 13838079 (+)
med11 med11,LOC107720680,LOC107676028 coding upstream 53265 13826792 ~ 13831196 (+)
arrb2a arrb2,LOC100335038,LOC106567894,LOC105023937 coding upstream 61623 13811706 ~ 13822838 (+)
tmem126a t126a,tmem126a coding upstream 99557 13782347 ~ 13784904 (+)
LOC113543629 NA coding upstream 334270 13547337 ~ 13550191 (+)
slc25a1a slc25a1a,LOC108276564,LOC108424536,LOC107586170,LOC107708615,LOC107720673,LOC107554324 coding downstream 9583 13899564 ~ 13904855 (+)
ltn1 ltn1 coding downstream 24027 13914008 ~ 13939043 (+)
paxbp1 paxbp1 coding downstream 744510 14634491 ~ 14654548 (+)
slc7a1a slc7a1,LOC108277031,LOC103044157,LOC108410642,LOC107592154,LOC107718716,LOC107685000,LOC107720662 coding downstream 766981 14656962 ~ 14673374 (+)
mtus2a LOC108277280 coding downstream 785124 14675105 ~ 14731263 (+)
LOC117599363 NA non-coding upstream 20826 13859796 ~ 13863635 (+)
G268587 NA non-coding upstream 358076 13521152 ~ 13526385 (+)
G268580 hspa8,LOC107577128,LOC100125490,LOC108423781,LOC107691633,LOC108277936,LOC107597532 non-coding upstream 408963 13432734 ~ 13475498 (+)
G268027 NA non-coding upstream 1118094 12766153 ~ 12766367 (+)
G267801 LOC107739129 non-coding upstream 1361940 12522186 ~ 12522521 (+)
LOC117599376 NA non-coding downstream 52704 13942685 ~ 13947023 (+)
G269251 NA non-coding downstream 665505 14555486 ~ 14556349 (+)
G269268 NA non-coding downstream 706983 14596964 ~ 14597818 (+)
LOC117599336 NA non-coding downstream 708626 14598607 ~ 14604363 (+)
G269393 NA non-coding downstream 892980 14782961 ~ 14783685 (+)
scaf4a scaf4,LOC107555128 other upstream 3002196 10865612 ~ 10882265 (+)
G266868 LOC108276566 other upstream 3313756 10569028 ~ 10570705 (+)
dclk1a dclk1,LOC107728871,LOC107577778 other upstream 4121764 9704360 ~ 9762697 (+)
LOC113543674 NA other upstream 4459606 9419665 ~ 9424855 (+)
G266161 NA other upstream 4548171 9335801 ~ 9336290 (+)
vps36 vps36,LOC107701118 other downstream 872332 14762313 ~ 14771073 (+)
trnar-ccu_11 NA other downstream 3197687 17087668 ~ 17087740 (+)
trnam-cau_40 NA other downstream 3197767 17087748 ~ 17087819 (+)
trnar-ccu_12 NA other downstream 3198468 17088449 ~ 17088521 (+)
trnam-cau_41 NA other downstream 3198548 17088529 ~ 17088600 (+)

Expression


Co-expression Network