trim69 (LOC108276850,LOC108440158,LOC103027413,LOC107746217,LOC107658579,LOC107688998)


Basic Information

Item Value
gene id trim69
gene name LOC108276850,LOC108440158,LOC103027413,LOC107746217,LOC107658579,LOC107688998
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 18948898 ~ 18958044 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942458.2
cgcacatacacacgccAATTTGCTCCTGAAACGAGCAGGAGACGCGAAACGCCCACCCGCCCACTCTCTTCCAGTCCCCCTTTTCCTTTCTGACAGTCAACAGGAAGACTGTGCCGAGCCTGCCAAAaagacaacagagagagagagagagagagagagagggagggaggaggggtaCAAGAAACAAACTCCAAACTCCAGGTTGCTTCTCTCAGCcagaacaaaaagtcaagaGGAGACCAGAGACCTTCTGCATGTGAGAAGAAGACAGATAACATCTCCAAGAATTTGCACGCGAGAATAAGAAAGCCCAAACCCGGCCTGATGTCTAACAAGCGTGCCAAAccggaaaaaacagaaaagcccAAAATGGCGCAGCGACTAAGCCGCGATCTGACCTGCTCAATCTGCCTGGATTTATTCAAGCAGCCCGTGTCTCTCCCGTGCGATCACACGTTCTGCCAGTCCTGCATTACCAACTACTGGAGCGGCGGAGGCGCGCGCGCACCCGGCCAACCTGGCACCGGTTCATCCGGCTCGTGCCCTCAGTGCCGCAAAGTTTTCCCCGGTCAGAGTTACCGGCCCAACCGCATCGTGGCCAACATCGTGGAGAGCTACAGCCGGGAGATCGAGGAGGAGAGCGCGAGCGCCACGAGCAGCACACCGAGCTTCGCACCGCGTTGCGCGCGACACCGCGAGGAACTGAAGCTGTACTGCGAGGAGGAGCACGAGCTCGTGTGTCTCGTCTGCGCCGTATCTCAGGAGCATCGGTCTCACGCGCTGGTGTGTGTGGACGAGGCGGAGCAGAAATACAGGATGTCACTGAGAGGCTCTGCCACGGCACTTCAGGCAGAGTTGAACACGGCAttggagtgtgagagagagactgaggatGAGGTGAAGAAACTGAAGGAACACACTGCAGACCTCAAGCAGCGTATCGAGGCTCAGTTTAGTGACCTCCACCAGTTCTTGTATCAGGAGGAGAAATTGCTACAGGTGAAGCTGAAGACGGAGGAGCGGCGGGAGCTGATCCGCCTGGACGAGCACAAAgcactgctgtgtgtggagATATCACGACTGCGGCGTGCTCTCTCAGAGATCGAGGAAAAACTGAGAGAGCATGATCCATACACACTGCTGAGGAACATAAAGACTCTCCTTCAAAGGCAGCCACTGAAGTTTGAGAAACCGTCTCTGACACCGCCACAGCTGTGTGAGGGTCGATTTGCTGGGCCGCTTCAGTACCGCGTCTGGAAATCTCTCAAAGGCAGCCTCTATCCAGTGCCTTCAGCCATCACGTTCAACTCGAGCACAGCGAACCCATGGCTGAGCGTGACCCCGTCGCTCACCTGCGTGCGCTACCAGACCTTCAACAGCTCTGCACGTGACAACCCGCAGCGCTTCGACGCTGCTCTGTCACTGCTCGGCAGTCAAGGCTTCACCCACGGATGCCACTACTGGGAAATTGAGGTGTCAAGCAGTGCTGTGTGGACAGTGGGCGTGGCACGAGAATCTGTTGCCAGGAAAGGTGTGATCAAAGCGCTGCCAGCCAACGGCTTCTGGACCGTCTCGCTCTCCTACGGTGTGCAGTACATGGCGGGGACGTGGCCTCCCACGGTCCTGTCCTTGCATGAGCAGTTGGAGCGCATTGGTGTGTACCTGGACTATAAGAGAGGCCTTGTGTCGTTCTATAATGCTGAGAGCATGACACACCTCTATACGTTCCGTGACACCTTTAATGAGACGCTCTACCCTTACTTCAACCTCGGCTTTCTGGATAAAGTGCATGAGAATGAGCCACTTAAAGTGTTCATGCccaaaatatgaatgaattctGGCTGAATTCAGGTGCTAATACTATAAGGAATTCAGTGTAGGGTCCAAAACCTTGAGTACACTACCAAGGGATGTTTTATTGAATCAATTATCAAATCATGCATTCTTCTCAGTTTGATATTATTCAGGAATCCATTGTTTAGTGGTGtaatgaatctctctctctctctctctctctc

Function

NR:

description
PREDICTED: zinc-binding protein A33-like

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K12030 TRIM62; tripartite motif-containing protein 62

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942458.2 True 2018 mRNA 0.54 6 18948898 18958044

Neighbor

gene id symbol gene type direction distance location
trnas-uga_9 NA coding upstream 11928 18936889 ~ 18936970 (+)
trnas-uga_8 NA coding upstream 12910 18935907 ~ 18935988 (+)
trnas-uga_7 NA coding upstream 13220 18935597 ~ 18935678 (+)
trnas-uga_6 NA coding upstream 13685 18935132 ~ 18935213 (+)
trnas-cga_2 NA coding upstream 13933 18934884 ~ 18934965 (+)
aak1b aak1b,LOC108276848,LOC108440145,LOC107689018 coding downstream 25089 18983133 ~ 19010793 (+)
LOC117599383 LOC108277332,LOC108440140 coding downstream 110162 19068206 ~ 19073060 (+)
LOC113544111 LOC108277332 coding downstream 124477 19082521 ~ 19101181 (+)
ddhd2 LOC108276773 coding downstream 145149 19103193 ~ 19119113 (+)
tacc1 LOC108276770 coding downstream 179193 19137237 ~ 19168592 (+)
G271557 NA non-coding upstream 5879 18942757 ~ 18943019 (+)
G271555 pcna,LOC107658578,LOC107688976,LOC107583397 non-coding upstream 8011 18937543 ~ 18940887 (+)
G271554 NA non-coding upstream 14758 18933911 ~ 18934140 (+)
G271552 NA non-coding upstream 17843 18929522 ~ 18931055 (+)
G271550 NA non-coding upstream 24827 18923815 ~ 18924071 (+)
G271540 NA non-coding downstream 124 18958168 ~ 18960267 (+)
G271568 NA non-coding downstream 2484 18960528 ~ 18960767 (+)
G271569 NA non-coding downstream 3258 18961302 ~ 18961555 (+)
G271571 NA non-coding downstream 5311 18963355 ~ 18963780 (+)
G271576 NA non-coding downstream 53131 19011175 ~ 19012232 (+)
G271406 NA other upstream 541400 18404269 ~ 18407498 (+)
si:ch73-234b20.5 LOC108276836,LOC108440734 other upstream 1847829 17099096 ~ 17101069 (+)
trnam-cau_42 NA other upstream 1859520 17089307 ~ 17089378 (+)
trnar-ccu_13 NA other upstream 1859599 17089227 ~ 17089299 (+)
trnam-cau_41 NA other upstream 1860298 17088529 ~ 17088600 (+)
G271863 NA other downstream 283665 19241709 ~ 19243905 (+)
LOC113544086 LOC108261382,LOC108276944,LOC108262018 other downstream 418048 19376092 ~ 19414627 (+)
LOC113544004 LOC108276941 other downstream 531162 19489206 ~ 19520777 (+)
LOC113543969 NA other downstream 824383 19782427 ~ 19786831 (+)
G272180 NA other downstream 835868 19793912 ~ 19825232 (+)

Expression


Co-expression Network